View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17799_low_9 (Length: 274)
Name: NF17799_low_9
Description: NF17799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17799_low_9 |
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| [»] scaffold0754 (1 HSPs) |
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Alignment Details
Target: scaffold0754 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6267 - 6530
Alignment:
| Q |
1 |
gcaatatgacgtatcgatctttaattggctacctgaataattaactcgttaaatattatgcnnnnnnnnnnnnnnnnctaatcttggcaagaattgaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6267 |
gcaatatgacgtatcgatctttaattggctacctgaataattaactcgttaaatattatgcaaaaagaaaaagaaaactaatcttggcaagaattgaatc |
6366 |
T |
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| Q |
101 |
attttatgcaccttatgctttgcttagttccnnnnnnncaaagctagtgggtccatgagaggagacaaagggtatcccatgataactgacctgcgattgg |
200 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6367 |
attttatgtaccttatgctttgcttagttccaaaaaaacaaagctagtgggtccatgagaggagacaaagggtatcccatgataactgacctgcgattgg |
6466 |
T |
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| Q |
201 |
ggcatcacagctacaaacaggagctttatcaaagttgagtttggacaaaacatcatgttgaaat |
264 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6467 |
ggcatcacagctacaaacaggagctttatgaaagttgagtttggacaaaacatcatgttgaaat |
6530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 22221046 - 22220783
Alignment:
| Q |
1 |
gcaatatgacgtatcgatctttaattggctacctgaataattaactcgttaaatattatgcnnnnnnnnnnnnnnnnctaatcttggcaagaattgaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22221046 |
gcaatatgacgtatcgatctttaattggctacctgaataattaactcgttaaatattatgcaaaaagaaaaagaaaactaatcttggcaagaattgaatc |
22220947 |
T |
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| Q |
101 |
attttatgcaccttatgctttgcttagttccnnnnnnncaaagctagtgggtccatgagaggagacaaagggtatcccatgataactgacctgcgattgg |
200 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22220946 |
attttatgtaccttatgctttgcttagttccaaaaaaacaaagctagtgggtccatgagaggagacaaagggtatcccatgataactgacctgcgattgg |
22220847 |
T |
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| Q |
201 |
ggcatcacagctacaaacaggagctttatcaaagttgagtttggacaaaacatcatgttgaaat |
264 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22220846 |
ggcatcacagctacaaacaggagctttatgaaagttgagtttggacaaaacatcatgttgaaat |
22220783 |
T |
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