View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1779_high_1 (Length: 1099)
Name: NF1779_high_1
Description: NF1779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1779_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 831; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 831; E-Value: 0
Query Start/End: Original strand, 20 - 886
Target Start/End: Complemental strand, 41904280 - 41903414
Alignment:
| Q |
20 |
cagccgttcctattgagcgcgtgaagcttctgattcaaaatcaagatgagatgattaaggctggtaggctttctgaaccttacaagggtattggagattg |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41904280 |
cagccgctcctattgagcgcgtgaagcttctgattcaaaatcaagatgagatgattaaggctggtaggctttctgaaccttacaagggtattggagattg |
41904181 |
T |
|
| Q |
120 |
ttttggaagaacagtcaaagatgaaggatttgcttcactttggaggggaaacactgtcaatgtcatccgttactttccaacacaggtttcctttcaaatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41904180 |
ttttggaagaacagtcaaagatgaaggatttgcttcactttggaggggaaacactgtcaatgttatccgttactttccaacacaggtttcctttcaaatt |
41904081 |
T |
|
| Q |
220 |
ttcaactgcgttaattatttctttaggccaatgtctaaattacattttcgctttgttgtgtgttaattaggccaatgtctaacatgattaatctattaca |
319 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41904080 |
ttcaactgcattaattatttctttaggccaatgtctaaattaaatttttgctttgttgtgtgttaattaggccaatgtctaacatgattaatctattaca |
41903981 |
T |
|
| Q |
320 |
ggcattcaactttgcattcaaagactactttaagaagctatttaacttcaagcaagagagggatggatattggaaagtctttgcaggaaatattgcatct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41903980 |
ggcattcaactttgcattcaaagactactttaagaagctatttaacttcaagcaagagagggatggatattggaaagtctttgcaggaaatattgcatct |
41903881 |
T |
|
| Q |
420 |
ggtgctgcagctggagcttcatcttccatcttcgtttactcgttggattatgctcgaactcgccttgcaagcgacgccaagtccacgaagaaaggtggag |
519 |
Q |
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| T |
41903880 |
ggtgctgcagctggagcttcatcttccatcttcgtttactcgttggattatgctcgaactcgccttgcaagcgacgccaagtccacgaagaaaggtggag |
41903781 |
T |
|
| Q |
520 |
agaggcaattcaatggcttgattgatgtctacaagaagacattacaatcagatggtattgctggtctttatcgcggcttcaatgtttcagttgttggaat |
619 |
Q |
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| T |
41903780 |
agaggcaattcaatggcttgattgatgtctacaagaagacattacaatcagatggtattgctggtctttatcgcggcttcaatgtttcagttgttggaat |
41903681 |
T |
|
| Q |
620 |
cattgtctaccgtggtttgtattttggactgtatgattctcttaagccagtgctcttggtaggaacgcttcaggtaagaagggggcattaattacacttc |
719 |
Q |
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| T |
41903680 |
cattgtctaccgtggtttgtattttggactgtatgattctcttaagccagtgctcttggtaggaacgtttcaggtaagaagggggcattaattacacttc |
41903581 |
T |
|
| Q |
720 |
attttatgttcattattattacatatcatgcttaaagattgtgttactatggatttagataacacatattcactcataagtgagtaggggacgatgtttt |
819 |
Q |
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| T |
41903580 |
attttatgttcattattattacatatcatgcttaaagattgtgttactatggatttagataacacatatttactcataagtgagtaggggacgatgtttt |
41903481 |
T |
|
| Q |
820 |
taaaaccaaatcggaaatcaaactagtgaaacctccgaatcatagttcaactacagttaaactcttg |
886 |
Q |
| |
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| T |
41903480 |
taaaaccaaatcgaaaatcaaactagtgaaacctccgaatcatagttcaactacagttaaacacttg |
41903414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 944 - 1083
Target Start/End: Complemental strand, 41903356 - 41903217
Alignment:
| Q |
944 |
ccggttgaaccaacaacaattcaaccggttcaatccggttcaatcagaatgcattactattaggatcaaaccaaccagcgaaactgtccaaatttttgtt |
1043 |
Q |
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| T |
41903356 |
ccggttgaaccaacaacaattcaaccagttcaatccggttcaatcagaatgcattacaattaggatcaaaccaaccagcgaaactgtccaaatttttgtt |
41903257 |
T |
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| Q |
1044 |
tggtcaaacttttaaaacattggtaggggtagactaaacc |
1083 |
Q |
| |
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| T |
41903256 |
tggtcaaacttttaaaacattggtaggggtagactaaacc |
41903217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 9141890 - 9141979
Alignment:
| Q |
43 |
aagcttctgattcaaaatcaagatgagatgattaaggctggtaggctttctgaaccttacaagggtattggagattgttttggaagaaca |
132 |
Q |
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| T |
9141890 |
aagcttttgatccaaaaccaggatgagatgatcaagtctggtaggctttctgagccttacaagggtattggtgattgctttaaaagaaca |
9141979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 658
Target Start/End: Original strand, 9142431 - 9142478
Alignment:
| Q |
611 |
tgttggaatcattgtctaccgtggtttgtattttggactgtatgattc |
658 |
Q |
| |
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||||||||||||||||||||||||| |||| || ||| |||||||||| |
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| T |
9142431 |
tgttggaatcattgtctaccgtggtctgtacttcggattgtatgattc |
9142478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 507 - 670
Target Start/End: Complemental strand, 30346194 - 30346031
Alignment:
| Q |
507 |
aagaaaggtggagagaggcaattcaatggcttgattgatgtctacaagaagacattacaatcagatggtattgctggtctttatcgcggcttcaatgttt |
606 |
Q |
| |
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||||| ||||| ||||||||||| ||||| || ||||||| |||||||| || ||||| || ||||| |||||||| |||||||| || ||||| | | |
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| T |
30346194 |
aagaagggtggtgagaggcaatttaatgggatggttgatgtttacaagaaaaccttacagtctgatggcattgctggcctttatcgtggattcaacatct |
30346095 |
T |
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| Q |
607 |
cagttgttggaatcattgtctaccgtggtttgtattttggactgtatgattctcttaagccagt |
670 |
Q |
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| T |
30346094 |
cgtgtgttggaattatagtgtatcgtggtctttactttggaatgtatgattctctgaaaccagt |
30346031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 525 - 670
Target Start/End: Original strand, 13560876 - 13561021
Alignment:
| Q |
525 |
caattcaatggcttgattgatgtctacaagaagacattacaatcagatggtattgctggtctttatcgcggcttcaatgtttcagttgttggaatcattg |
624 |
Q |
| |
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||||||||||| | ||||||||||||||||||||| | | | |||||||||||||| ||||| || || |||||| | || ||| |||||||||| |
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| T |
13560876 |
caattcaatggtcttattgatgtctacaagaagacactggcaactgatggtattgctggcctttaccgtggtttcaatatctcttgtgtcggaatcattg |
13560975 |
T |
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| Q |
625 |
tctaccgtggtttgtattttggactgtatgattctcttaagccagt |
670 |
Q |
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| T |
13560976 |
tgtatcgtggtctctactttggaatgtatgattccctaaagccagt |
13561021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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