View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1779_high_6 (Length: 260)
Name: NF1779_high_6
Description: NF1779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1779_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 6970454 - 6970651
Alignment:
| Q |
47 |
tgaaacaaggtgacatgtttgctcaaataggatccataattgcttccttgatgtttatttgggctatttttcaacaattttttccctatcaacttaggaa |
146 |
Q |
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| T |
6970454 |
tgaaacaaggtgacatgtttgctcaaataggatccataattgcttccttgatgtttatttgggctatttttcaacaattttttccctatcaacttaggaa |
6970553 |
T |
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| Q |
147 |
ccaaattgagaaatactcacaaaaattggttacttttatctacccttacatccaaatcacatttcatgagtttactggtgaaagactcatgagaagtg |
244 |
Q |
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| T |
6970554 |
ccaaattgagaaatactcacaaaaattggttacttttatctacccttatatccaaatcacatttcatgagtttactggtgaaagactcatgagaagtg |
6970651 |
T |
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Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 11449217 - 11449400
Alignment:
| Q |
61 |
atgtttgctcaaataggatccataattgcttccttgatgtttatttgggctatttttcaacaattttttccctatcaacttaggaaccaaattgagaaat |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||| |
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| T |
11449217 |
atgtttgctcaaataggatccataattgcttccttgatgtttatttgggctatttttcaacaatattttccttatcaacttaggaacttaattgataaat |
11449316 |
T |
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| Q |
161 |
actcacaaaaattggttacttttatctacccttacatccaaatcacatttcatgagtttactggtgaaagactcatgagaagtg |
244 |
Q |
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|||| |||| |||||| ||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
11449317 |
actctcaaagattggtcacttttatctacccttatattcaaatcacatttcatgagttcactggtgagagactcatgagaagtg |
11449400 |
T |
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