View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1779_high_9 (Length: 226)
Name: NF1779_high_9
Description: NF1779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1779_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 3304025 - 3303844
Alignment:
| Q |
1 |
tcaatgttttaaaatattggagtattaagctttaaaaagtcaatgtttgaatt-caaacctaaaatatctttatgaaagaaattaacacatattagactt |
99 |
Q |
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| T |
3304025 |
tcaatgttttaaaatattggagtattaagctttaaaaagtcaatgtttaaatttcaaacctaaaatatctttatgaaagaaattaacacgtattagactt |
3303926 |
T |
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| Q |
100 |
ttctctttgaattatatgtagagactaatgagtttaaaaaatgatgtatttggttcataacatatatcaaatacaatcattt |
181 |
Q |
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| T |
3303925 |
ttctctttgaattatacgtagagactaatgaatttaaaaaatgatgtatttgatttataatatataccaaatacaataattt |
3303844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 4131902 - 4131764
Alignment:
| Q |
23 |
tattaagctttaaaaagtcaatgtttgaattcaaacctaaaatatctttatgaaagaaattaacacatattagacttttctctttgaattatatgtagag |
122 |
Q |
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| T |
4131902 |
tattatgctttaaaaagccaat-tttaaattcaaacctaa--tctctttatgaaagaaattaatacatattagacttttctctttaaattatacgcagag |
4131806 |
T |
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| Q |
123 |
actaatgagtttaaaaaatgatgtatttggttcataacatata |
165 |
Q |
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| T |
4131805 |
attaatgag-ttaaaaaataatacatttagttcataatatata |
4131764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 4131495 - 4131444
Alignment:
| Q |
175 |
atcatttatatcttataaaaatgacgagagagtagaaattaaggttagtgaa |
226 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4131495 |
atcatttatctcttataaaaatgatgagagagtagaaattaaggttagtgaa |
4131444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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