View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1779_low_2 (Length: 409)
Name: NF1779_low_2
Description: NF1779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1779_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 95 - 396
Target Start/End: Original strand, 53424378 - 53424679
Alignment:
| Q |
95 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
194 |
Q |
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| T |
53424378 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
53424477 |
T |
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| Q |
195 |
ggattgtggcagcatcttttgttcttaccacggttgctgggaaatcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
294 |
Q |
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| T |
53424478 |
ggattgtggcagcatctcttgttcttaccacggttgctgggaagtcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
53424577 |
T |
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| Q |
295 |
acccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctgat |
394 |
Q |
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| T |
53424578 |
acccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaat |
53424677 |
T |
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| Q |
395 |
ga |
396 |
Q |
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|| |
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| T |
53424678 |
ga |
53424679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 53424066 - 53424158
Alignment:
| Q |
12 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctgattgaatgtgagtgtaaaataactttatat |
104 |
Q |
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| T |
53424066 |
gagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctaattgaatgtgagtgtaaaataactttatat |
53424158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 165 - 381
Target Start/End: Original strand, 53431594 - 53431816
Alignment:
| Q |
165 |
atgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaatc---ataatttcttgcctctcctcc |
261 |
Q |
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| T |
53431594 |
atgcataccttgttgaattggcgtattggaggagtgtggcaacatcttttgatcttaccactgttgctgggaagtctccataactacgtatcatagctcc |
53431693 |
T |
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| Q |
262 |
ttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacat |
358 |
Q |
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| T |
53431694 |
atcctggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaa |
53431793 |
T |
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| Q |
359 |
atgacaatctttcctttgacttt |
381 |
Q |
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| T |
53431794 |
atgacaatctttcctttgacttt |
53431816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 396
Target Start/End: Complemental strand, 48374134 - 48373886
Alignment:
| Q |
151 |
taaaaaactttaaaatgcataccttgttgaattgacatattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataattt |
247 |
Q |
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| T |
48374134 |
taaaaacctttaaaatgcttacctcgttgaattgacatatttgaggagtgtgacaacatcttttgatcttaccactgttgctgggaagtctgcataaata |
48374035 |
T |
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| Q |
248 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatcta |
347 |
Q |
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| T |
48374034 |
tttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatcta |
48373935 |
T |
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| Q |
348 |
tgccatcacatatgacaatctttcctttgactttgttcgtatctgatga |
396 |
Q |
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| T |
48373934 |
ccccatcgcagatgacaatatttccttcaacttttttcttatctaatga |
48373886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 53308910 - 53308955
Alignment:
| Q |
155 |
aaactttaaaatgcataccttgttgaattgacatattggaggattg |
200 |
Q |
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| T |
53308910 |
aaactttataatgcttaccttgttgaattgacatattggagtattg |
53308955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 381
Target Start/End: Original strand, 26096526 - 26096556
Alignment:
| Q |
351 |
catcacatatgacaatctttcctttgacttt |
381 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttt |
26096556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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