View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1779_low_7 (Length: 241)
Name: NF1779_low_7
Description: NF1779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1779_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 41997574 - 41997479
Alignment:
| Q |
109 |
gatttacgtttcatctaaagctaaggttatagtttgggtattacttaaaggaagaatagcaactagagacatttgctcaaaagaggggtaatgtcc |
204 |
Q |
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| T |
41997574 |
gatttatgtttcatctaaagctaaggttatagtttgaggattacttaaaggaagaatagcaactagagacatttgctcaaaagaggggtaatgtcc |
41997479 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 41997635 - 41997574
Alignment:
| Q |
16 |
caagttcttgttttaaacatttggtctaacatataaatacaaatgttcaatctattgatatg |
77 |
Q |
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| T |
41997635 |
caagttcttgttttaaacatttggtctcacatataaatacaaatgttcaatctagtgatatg |
41997574 |
T |
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