View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17800_high_1 (Length: 254)

Name: NF17800_high_1
Description: NF17800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17800_high_1
NF17800_high_1
[»] chr6 (4 HSPs)
chr6 (110-235)||(15576189-15576314)
chr6 (170-221)||(13194291-13194342)
chr6 (171-240)||(6091920-6091989)
chr6 (91-163)||(15574868-15574941)
[»] chr5 (15 HSPs)
chr5 (5-170)||(12340106-12340271)
chr5 (88-163)||(17027467-17027543)
chr5 (110-170)||(30072141-30072201)
chr5 (99-157)||(22754900-22754958)
chr5 (170-235)||(11273683-11273748)
chr5 (109-170)||(24517316-24517377)
chr5 (87-156)||(22229748-22229818)
chr5 (110-163)||(25594791-25594844)
chr5 (110-170)||(17382127-17382187)
chr5 (170-242)||(17768641-17768713)
chr5 (171-235)||(19571048-19571112)
chr5 (171-221)||(24518964-24519014)
chr5 (87-148)||(24841692-24841754)
chr5 (171-240)||(18451061-18451130)
chr5 (175-235)||(25682147-25682207)
[»] chr8 (12 HSPs)
chr8 (91-170)||(13082029-13082109)
chr8 (103-170)||(12956445-12956512)
chr8 (110-170)||(14977199-14977259)
chr8 (87-170)||(16054233-16054317)
chr8 (110-170)||(24120194-24120254)
chr8 (170-232)||(12957559-12957621)
chr8 (170-235)||(32240446-32240511)
chr8 (172-235)||(13305658-13305721)
chr8 (170-221)||(13803096-13803147)
chr8 (88-162)||(28252481-28252556)
chr8 (197-242)||(26853601-26853646)
chr8 (110-170)||(16052369-16052429)
[»] chr2 (6 HSPs)
chr2 (87-170)||(35707742-35707826)
chr2 (110-170)||(21505231-21505291)
chr2 (170-242)||(31000597-31000669)
chr2 (89-170)||(1733042-1733123)
chr2 (87-170)||(25473976-25474060)
chr2 (172-240)||(28455128-28455196)
[»] scaffold0171 (2 HSPs)
scaffold0171 (171-243)||(7349-7421)
scaffold0171 (110-156)||(6159-6205)
[»] chr3 (9 HSPs)
chr3 (88-162)||(25919564-25919639)
chr3 (89-162)||(12573231-12573305)
chr3 (89-162)||(13549695-13549769)
chr3 (110-170)||(33914654-33914714)
chr3 (87-169)||(21017815-21017899)
chr3 (89-168)||(1475374-1475454)
chr3 (176-240)||(10343000-10343064)
chr3 (88-170)||(17637043-17637126)
chr3 (174-235)||(33913400-33913461)
[»] chr1 (15 HSPs)
chr1 (171-242)||(50048239-50048310)
chr1 (87-163)||(8247756-8247833)
chr1 (89-156)||(21451921-21451989)
chr1 (87-156)||(12424020-12424090)
chr1 (170-240)||(34522115-34522185)
chr1 (110-170)||(12810285-12810345)
chr1 (173-235)||(17836791-17836853)
chr1 (162-240)||(23224619-23224697)
chr1 (173-235)||(30676667-30676729)
chr1 (103-144)||(25266462-25266503)
chr1 (110-147)||(34935297-34935334)
chr1 (115-163)||(25730670-25730718)
chr1 (110-170)||(26657439-26657499)
chr1 (171-235)||(27682929-27682993)
chr1 (110-170)||(50047144-50047204)
[»] chr7 (18 HSPs)
chr7 (170-240)||(21544679-21544749)
chr7 (109-175)||(2632523-2632590)
chr7 (171-242)||(7494484-7494555)
chr7 (87-163)||(21471736-21471813)
chr7 (170-238)||(7143571-7143639)
chr7 (170-242)||(7776350-7776422)
chr7 (176-235)||(9071392-9071451)
chr7 (171-242)||(18494555-18494626)
chr7 (166-221)||(21473039-21473094)
chr7 (84-170)||(22067898-22067985)
chr7 (87-148)||(7142037-7142099)
chr7 (197-238)||(7152116-7152157)
chr7 (171-232)||(14074486-14074547)
chr7 (171-232)||(14384514-14384575)
chr7 (110-170)||(20446201-20446262)
chr7 (110-171)||(23124864-23124924)
chr7 (87-131)||(9761537-9761581)
chr7 (87-131)||(9801996-9802040)
[»] chr4 (12 HSPs)
chr4 (87-156)||(15192142-15192212)
chr4 (171-241)||(47023552-47023622)
chr4 (170-233)||(20717941-20718004)
chr4 (109-170)||(34864383-34864444)
chr4 (87-170)||(9783075-9783159)
chr4 (87-146)||(12111446-12111506)
chr4 (170-234)||(12840697-12840761)
chr4 (171-235)||(22219945-22220009)
chr4 (197-240)||(24580004-24580047)
chr4 (88-170)||(25315323-25315406)
chr4 (181-232)||(30797703-30797754)
chr4 (110-163)||(5906819-5906872)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 15576314 - 15576189
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||    
T  15576314 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgttgatggacgaaattggcaagtgcatcaaatcgtaacaag 15576215  T
Q  210 taataaagtagtcagattatcgttct 235  Q
    ||||||||||||||| ||||||||||    
T  15576214 taataaagtagtcagtttatcgttct 15576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 13194342 - 13194291
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 221  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||||||    
T  13194342 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagt 13194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 6091920 - 6091989
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    ||||||||||||||  ||||| ||| ||||||||| || |||||||||||  || |||||||||| ||||    
T  6091920 tgatggacgaaattgacaagtgcattaaatcgtaaaaaataataaagtagaaagtttatcgttctccaca 6091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 15574868 - 15574941
Alignment:
Q  91 catcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    ||||||| |||||||||  ||| || ||||||| ||||||||| |||| |||||||||| ||||||| ||||||    
T  15574868 catcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagag 15574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 12340271 - 12340106
Alignment:
Q  5 ctacgatattaaatattgttaaggaaaaa-tagtggtggcattgacggaccgtgtctttcatcttggttgcagaatttgcgatagagcatcataggacat 103  Q
    |||| ||||| | |||||||||||||||| |||||  ||||| || |||||||||||| |||||| ||||||||| |  ||| ||||||||||| |||||    
T  12340271 ctacaatattgattattgttaaggaaaaaatagtgagggcatggaaggaccgtgtcttgcatcttcgttgcagaactgacgacagagcatcatatgacat 12340172  T
Q  104 tttgtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||  ||||||||||||| ||||||||| |||| |||||||||| | ||||| |||||| ||||||    
T  12340171 tttggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgt 12340106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 17027467 - 17027543
Alignment:
Q  88 gagcatcataggacatttt-gtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    |||||||||| |||||||| |  ||||||||||||||||||||||| |||||||||||| || ||||||| ||||||    
T  17027467 gagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagag 17027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 30072141 - 30072201
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||| |||||||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  30072141 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgt 30072201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 22754900 - 22754958
Alignment:
Q  99 gacattttgtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaa 157  Q
    |||||||||  |||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  22754900 gacattttggatatgtttttagtacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 11273683 - 11273748
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||| ||||| |||||| ||| |||| |||||||||||||||||||| || ||||||||||    
T  11273683 ttgatggacaaaattggcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcgttct 11273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 24517316 - 24517377
Alignment:
Q  109 ttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||||| |||| ||||| |||| |||||||||| |||||||||||||| ||||||    
T  24517316 ttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgt 24517377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 22229748 - 22229818
Alignment:
Q  87 agagcatcataggacattttgtttatgtttt-tagtacttttctttgaatttaaagacaaataggatgaga 156  Q
    ||||||||||| | |||||||  |||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  22229748 agagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 25594844 - 25594791
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    |||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||    
T  25594844 tatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagag 25594791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 17382187 - 17382127
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||| |||||||||||| |||| |||| |||||||||| ||||||| |||||| ||||||    
T  17382187 tatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgt 17382127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 17768713 - 17768641
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    ||||||||||||||| ||||||  |  ||||||||| ||||||||||||||| || |||| ||||| ||||||    
T  17768713 ttgatggacgaaattggcaagtaaaccaaatcgtaagaagtaataaagtagtaagtttattgttctccacagg 17768641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 19571112 - 19571048
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    |||||||| ||||| |||||| ||  |||||||||||| |||||||||||| || ||||||||||    
T  19571112 tgatggactaaatttgcaagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgttct 19571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 24519014 - 24518964
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 221  Q
    |||||||||||| | ||||||  || |||||||||||||||||||||||||    
T  24519014 tgatggacgaaactggcaagtgtatcaaatcgtaacaagtaataaagtagt 24518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 24841692 - 24841754
Alignment:
Q  87 agagcatcataggacattttgtt-tatgtttttagtacttttctttgaatttaaagacaaata 148  Q
    ||||||||||| |||||||| |  ||||||||||||||| ||||||| |||| ||||||||||    
T  24841692 agagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaata 24841754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 18451061 - 18451130
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    |||||||||||||| ||||||  |  | |||||||||||||||||||| || || |||||||||| ||||    
T  18451061 tgatggacgaaattggcaagtggaccagatcgtaacaagtaataaagttgtaagtttatcgttctccaca 18451130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 25682207 - 25682147
Alignment:
Q  175 ggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||| |  ||||||||||    
T  25682207 ggacgaaattggcaagtgcactaaatcgtaacaagtaataaaatagtaattttatcgttct 25682147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 13082109 - 13082029
Alignment:
Q  91 catcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  13082109 catcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgt 13082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 12956445 - 12956512
Alignment:
Q  103 ttttgtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||| ||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  12956445 ttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgt 12956512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 14977259 - 14977199
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||| ||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  14977259 tatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgt 14977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 16054233 - 16054317
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||| |||||||||  ||||| |||||||| ||||||||| |||| |||||||||| ||| ||| |||||| ||||||    
T  16054233 agagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgt 16054317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 24120194 - 24120254
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  24120194 tatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgt 24120254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 12957621 - 12957559
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 232  Q
    |||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||    
T  12957621 ttgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcgt 12957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 32240511 - 32240446
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||| ||||| |||||| ||  |||| |||||||||||||||||||| || ||||||||||    
T  32240511 ttgatggacaaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaagtttatcgttct 32240446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 13305721 - 13305658
Alignment:
Q  172 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||||||| |||||| |   |||| |||||||||||||||||||| || ||||||||||    
T  13305721 gatggacgaaattggcaagtgcgcaaaattgtaacaagtaataaagtagttagtttatcgttct 13305658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 13803096 - 13803147
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 221  Q
    |||||||||||||||  ||||| ||| |||||||||||||||||||| ||||    
T  13803096 ttgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaaatagt 13803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 28252556 - 28252481
Alignment:
Q  88 gagcatcataggacattttgt-ttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 162  Q
    |||||||||| || ||||| | ||||||||||| ||||||| || | ||||||||||||||| ||||||| |||||    
T  28252556 gagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttaga 28252481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 26853646 - 26853601
Alignment:
Q  197 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    ||||||||||||||||||||||||| || | |||||||| ||||||    
T  26853646 aaatcgtaacaagtaataaagtagtaagttcatcgttctccacagg 26853601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 16052429 - 16052369
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||||||||||| |||| |||| | ||||||||  |||||| |||||| ||||||    
T  16052429 tatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgt 16052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 35707742 - 35707826
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  35707742 agagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgt 35707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 21505291 - 21505231
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  21505291 tatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgt 21505231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 31000669 - 31000597
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||||||||||| || ||||| |||| ||||||    
T  31000669 ttgatggacgaaatttgcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagg 31000597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 1733042 - 1733123
Alignment:
Q  89 agcatcataggacattttgtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||| ||||||||  ||||||||||||||||||| |||  |||| |||||||||  ||||||| |||||| ||||||    
T  1733042 agcatcatatgacattttagttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgt 1733123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 25473976 - 25474060
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||| |||||||||  |||||||||||||| |||| |||  |||| |||||||||| ||||||| |||||| ||||||    
T  25473976 agagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgt 25474060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 28455128 - 28455196
Alignment:
Q  172 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    ||||||||||||| |||||| ||  ||||| ||||||||| ||||||||| || |||| ||||| ||||    
T  28455128 gatggacgaaattggcaagtacaccaaatcataacaagtattaaagtagtaagtttatggttctccaca 28455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 7421 - 7349
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacaggt 243  Q
    ||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||||| |||||||    
T  7421 tgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacaggt 7349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 6159 - 6205
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgaga 156  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  6159 tatgtttttagtacttttctttccatttaaacacaaataagatgaga 6205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 25919639 - 25919564
Alignment:
Q  88 gagcatcataggacattt-tgtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 162  Q
    |||||||||| || |||| || ||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  25919639 gagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttaga 25919564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 12573231 - 12573305
Alignment:
Q  89 agcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 162  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  12573231 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 12573305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 13549695 - 13549769
Alignment:
Q  89 agcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 162  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  13549695 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 13549769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 33914714 - 33914654
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| || ||||||    
T  33914714 tatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgt 33914654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 21017815 - 21017899
Alignment:
Q  87 agagcatcataggacattttgtt--tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 169  Q
    ||||||||||| || ||||| ||  ||||||||||||| ||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  21017815 agagcatcatatgatatttttttgttatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttg 21017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 1475454 - 1475374
Alignment:
Q  89 agcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagtt 168  Q
    ||||||||| |||||||||  |||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||| ||||    
T  1475454 agcatcatatgacattttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagtt 1475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 10343064 - 10343000
Alignment:
Q  176 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    |||||||||||||||| ||  |||||||||| ||||||||| |||| || |||||||||| ||||    
T  10343064 gacgaaattagcaagtgcacaaaatcgtaacgagtaataaaatagtaagtttatcgttctccaca 10343000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 17637043 - 17637126
Alignment:
Q  88 gagcatcataggacatttt-gtttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||| |||||||| |  ||||||| || |||||||||||| | ||||||||||||| ||| ||||| |||| ||||||    
T  17637043 gagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgt 17637126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 33913400 - 33913461
Alignment:
Q  174 tggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||||| |||||| ||  |||| |||||||||||||||||||| |  ||||||||||    
T  33913400 tggacgaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgttct 33913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 50048310 - 50048239
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    |||||||||||||| |||||| ||| ||||  ||||||||||||||||||| || |||||||||| ||||||    
T  50048310 tgatggacgaaattggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagg 50048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 8247833 - 8247756
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagta-cttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    ||||||||||| |||||||||  |||||||||| || |||||||||| |||| |||||||||| ||||||| ||||||    
T  8247833 agagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagag 8247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 21451989 - 21451921
Alignment:
Q  89 agcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgaga 156  Q
    ||||||||| |||||||||  |||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  21451989 agcatcatatgacattttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgaga 21451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 12424090 - 12424020
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgaga 156  Q
    ||||||||||| || ||||||  |||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  12424090 agagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgaga 12424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 34522185 - 34522115
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    |||||||| |||||| |||||| ||  |||||||||||||||||||| |||| || |||||||||| ||||    
T  34522185 ttgatggaagaaattggcaagtgcaccaaatcgtaacaagtaataaaatagtaagtttatcgttctccaca 34522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 12810285 - 12810345
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||||||||||||||  ||||||||||||||| | |||||  ||||| ||||||    
T  12810285 tatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgt 12810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 17836791 - 17836853
Alignment:
Q  173 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    |||||||||||| |||||| ||  ||||| |||||||||| |||||||| || ||||||||||    
T  17836791 atggacgaaattggcaagtgcaccaaatcataacaagtaagaaagtagtaagtttatcgttct 17836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 23224697 - 23224619
Alignment:
Q  162 agtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    |||| ||| |||||| ||||||| |||||| | | ||||||||||||||||||| ||||| || ||||| |||| ||||    
T  23224697 agtaattggtgatgggcgaaattggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagtttatcattctccaca 23224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 30676729 - 30676667
Alignment:
Q  173 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||| ||  ||||||||  ||||||||||||||||||||||||| |  ||||||||||    
T  30676729 atggacgaacttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatttatcgttct 30676667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 25266503 - 25266462
Alignment:
Q  103 ttttgtttatgtttttagtacttttctttgaatttaaagaca 144  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  25266503 ttttggttatgtttttagtacttttctttgcatttgaagaca 25266462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 34935334 - 34935297
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaat 147  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  34935334 tatgtttttagttattttctttgaatttaaagacaaat 34935297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 25730718 - 25730670
Alignment:
Q  115 ttttagtacttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    |||||||||||||||||| |||| || ||||||| ||||||| ||||||    
T  25730718 ttttagtacttttctttgcatttgaaaacaaataagatgagagttagag 25730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 26657439 - 26657499
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||| |||||||||||| |||| |||||||||| | |||||  ||||| ||||||    
T  26657439 tatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgt 26657499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 27682993 - 27682929
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||||||||  ||||| ||  ||| ||||||||||||||||||||| || |||| |||||    
T  27682993 tgatggacgaaattgacaagtgcaccaaaccgtaacaagtaataaagtagtaagtttattgttct 27682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 50047144 - 50047204
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||  |||||||||||| |||| |||||||||| ||||| || ||||| ||||||    
T  50047144 tatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgt 50047204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 21544679 - 21544749
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||||||||| || ||| |||||| ||||    
T  21544679 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttaccgttctccaca 21544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 2632590 - 2632523
Alignment:
Q  109 ttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgttgatg 175  Q
    |||||||| |||||||||| ||||| |||||||||| ||||| |||||| |||||| |||||||||||    
T  2632590 ttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatg 2632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 7494555 - 7494484
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||| |||| || ||||| |||| ||||||    
T  7494555 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagg 7494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 21471736 - 21471813
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||| ||| |||| |||||||||| ||||| | ||||||    
T  21471736 agagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagag 21471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 7143639 - 7143571
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttca 238  Q
    |||||||| ||||||  ||||| ||  ||||||||||||||||||||||||  || |||||||||||||    
T  7143639 ttgatggatgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagcaagtttatcgttcttca 7143571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 7776350 - 7776422
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    |||||| || |||||||||||| ||  ||||| |||||||||| |||||||| || |||||||||| ||||||    
T  7776350 ttgatgaacaaaattagcaagtgcaccaaatcttaacaagtaacaaagtagtaagtttatcgttctccacagg 7776422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 9071451 - 9071392
Alignment:
Q  176 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||| || || |||||||    
T  9071451 gacgaaattagcaactgcatcaaatcgtaacaagtaaaaaagtagtaagtttttcgttct 9071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 18494555 - 18494626
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 242  Q
    |||| ||||||||| |||||| ||  ||||||||||||||||||| ||||| || |||| ||||| ||||||    
T  18494555 tgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg 18494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 21473094 - 21473039
Alignment:
Q  166 gttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 221  Q
    |||||||||||||||||||| ||||| ||  ||||| |||||||| ||||||||||    
T  21473094 gttgttgatggacgaaattatcaagtgcaccaaatcataacaagttataaagtagt 21473039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 22067985 - 22067898
Alignment:
Q  84 gatagagcatcataggacattttgtttatgtttttagt-acttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||| ||||||||| |||||||||  |||||||||||| | |||| |||| |||| |||||||||| ||||||| ||| || ||||||    
T  22067985 gataaagcatcatatgacattttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgt 22067898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 7142037 - 7142099
Alignment:
Q  87 agagcatcataggacatttt-gtttatgtttttagtacttttctttgaatttaaagacaaata 148  Q
    ||||||||||| |||||||| |  |||||||||| || ||||||||| |||||||||||||||    
T  7142037 agagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaata 7142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 7152157 - 7152116
Alignment:
Q  197 aaatcgtaacaagtaataaagtagtcagattatcgttcttca 238  Q
    ||||||||||||||||||||||||| || |||||||| ||||    
T  7152157 aaatcgtaacaagtaataaagtagtaagtttatcgtttttca 7152116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 14074547 - 14074486
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 232  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14074547 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 14384575 - 14384514
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 232  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14384575 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14384514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 20446201 - 20446262
Alignment:
Q  110 tatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||| ||||||| ||||| |||| ||||||| || |||||||||||||| ||||||    
T  20446201 tatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgt 20446262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 23124864 - 23124924
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgtt 171  Q
    |||||||||||||| |||||||  |||| |||||||||| ||||||| |||||| |||||||    
T  23124864 tatgtttttagtac-tttctttacatttgaagacaaataagatgagatttagaggagttgtt 23124924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 9761581 - 9761537
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtacttttcttt 131  Q
    ||||||||||| |||||||||  || |||||||||||||||||||    
T  9761581 agagcatcatatgacattttggctacgtttttagtacttttcttt 9761537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 9802040 - 9801996
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtacttttcttt 131  Q
    ||||||||||| |||||||||  || |||||||||||||||||||    
T  9802040 agagcatcatatgacattttggctacgtttttagtacttttcttt 9801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 15192142 - 15192212
Alignment:
Q  87 agagcatcataggacattttgt-ttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 156  Q
    ||||||||||| |||||||| | |||||||||| ||||||||||||| |||| |||||||||| |||||||    
T  15192142 agagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 47023552 - 47023622
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacag 241  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||||| ||||| || ||||| ||||||||||    
T  47023552 tgatgaacgaaattggcaagtacatcaaatcgtaacaagtaataaggtagtaagtttatctttcttcacag 47023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 20718004 - 20717941
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgtt 233  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||| || ||||||||    
T  20718004 ttgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtt 20717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 34864444 - 34864383
Alignment:
Q  109 ttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| | | |||||| ||||||    
T  34864444 ttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgt 34864383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 9783159 - 9783075
Alignment:
Q  87 agagcatcataggacattttgtttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||  |||| ||| |||||  ||||||| |||||| ||||||    
T  9783159 agagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgt 9783075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 12111506 - 12111446
Alignment:
Q  87 agagcatcataggacattttgt-ttatgtttttagtacttttctttgaatttaaagacaaa 146  Q
    ||||||||||| |||||||| | ||||||||||||||||||| |||| |||| ||||||||    
T  12111506 agagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa 12111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 12840697 - 12840761
Alignment:
Q  170 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttc 234  Q
    ||||||||||||||| |||||| ||   |||||||||||||| ||||||||| || |||||||||    
T  12840697 ttgatggacgaaattggcaagtgcactgaatcgtaacaagtattaaagtagtaagtttatcgttc 12840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 22220009 - 22219945
Alignment:
Q  171 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 235  Q
    ||||||||||||||  ||||| ||  ||||| ||||||||||||||||||| || ||||||||||    
T  22220009 tgatggacgaaattgacaagtgcactaaatcataacaagtaataaagtagtaagtttatcgttct 22219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 24580047 - 24580004
Alignment:
Q  197 aaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 240  Q
    ||||||||||||||||||||||||| || |||||||||| ||||    
T  24580047 aaatcgtaacaagtaataaagtagttagtttatcgttctccaca 24580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 25315406 - 25315323
Alignment:
Q  88 gagcatcataggacattttgtttatgttttt-agtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 170  Q
    |||||||||| ||||||||  |||||||||| |||||||||||||  |||| |||| ||||| |||||||  ||||| ||||||    
T  25315406 gagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgt 25315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 30797754 - 30797703
Alignment:
Q  181 aattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 232  Q
    |||| |||||| ||| ||||||||||||||||||||||||| || |||||||    
T  30797754 aattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgt 30797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 5906872 - 5906819
Alignment:
Q  110 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 163  Q
    |||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||    
T  5906872 tatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagag 5906819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University