View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17800_low_1 (Length: 488)
Name: NF17800_low_1
Description: NF17800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17800_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 13867696 - 13868150
Alignment:
| Q |
15 |
aacctgtggggcaccaatatcatcgtcacagttacttccgttgcctccgtcgtccaaacctggatcgaaaaggcgctccaactccgtagcgatgtctatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13867696 |
aacctgtggggcaccaatatcatcgtcacagttacttccgttgcctcc-tcgtccaaacctggatcgaaaaggcgctccaactccgtagcgatgtctatc |
13867794 |
T |
|
| Q |
115 |
ccaagtttaccttcatcataggcttcaccattgatccggacataaacacattgcagttctgtgttggtcatcgctgcctcattttccagctcgctcatgc |
214 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13867795 |
ccaagtttaccttcatcttaggcttcgccattgatccggacataaacacgttgcagttctgtgttggtcatcgctgcctcagtttccagctcgctcatgc |
13867894 |
T |
|
| Q |
215 |
agctaccataccggattgtctccgcgttttcatgaaggatcgtaggattggattcccagggttcaaaaacttaaattattcacaagatctgaagtcgtcc |
314 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13867895 |
agctaccacaccggattgtctccgtgttttcatgaaggatcgtaggattggattcccagggttcaaaaacttaaattattcacaagatctgaagtcgtcg |
13867994 |
T |
|
| Q |
315 |
aagcacgcgttggagatgttcataaatcctgctgatctcacactgtggcaggaacggttgttgaattactccgtggatgacattgttaaaataattcttg |
414 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13867995 |
aagcaggccttggagatgttcataaatcctgctgatctcacactgtggcgggaacggttgttgaattactccgtggatgacattgttaaaataactcttg |
13868094 |
T |
|
| Q |
415 |
gattctgggtgcagctgaaagaagacgttatgatgagcgattggagcgtagaacgt |
470 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13868095 |
gattcaaggtgcggctgaaagaagacgttaggatgagcgattggagcgtagaacgt |
13868150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 11876512 - 11876254
Alignment:
| Q |
96 |
ctccgtagcgatgtctatcccaagtttaccttcatcataggcttcaccattgatccggacataaacacattgcagttctgtgttggtcatcgctgcctca |
195 |
Q |
| |
|
||||||| |||||||| | ||||| ||| |||||||| ||||| |||| ||||| | |||||||||||||||||| ||| | | |||||||||| |
|
|
| T |
11876512 |
ctccgtaatgatgtctaccgcaagtctacattcatcatcggctttgccatcgatccttaggtaaacacattgcagttctcccttgctgaccgctgcctca |
11876413 |
T |
|
| Q |
196 |
ttttccagctcgctcatgcagctaccataccggattgtctccgcgttttcatgaaggatcgtaggattggattcccagggttcaaaaacttaaattattc |
295 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | | | || | ||||||||||||||||| ||||||||||||||| ||||| ||| || ||||| |
|
|
| T |
11876412 |
ttttccagctcgctcgcgcagataccataccacaaatttttcgtgatttcatgaaggatcgtatgattggattcccaggtttcaataacaaaacttattt |
11876313 |
T |
|
| Q |
296 |
acaagatctgaagtcgtccaagcacgcgttggagatgttcataaatcctgctgatctca |
354 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
11876312 |
gcaagatttgaggtcgtcgaagcacgcgttggagatgtacataagtcttgctgatctca |
11876254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 419
Target Start/End: Original strand, 11885720 - 11885982
Alignment:
| Q |
157 |
taaacacattgcagttctgtgttggtcatcgctgcctcattttccagctcgctcatgcagctaccataccggattgtctccgcgttttcatgaaggatcg |
256 |
Q |
| |
|
||||||| ||| |||||||||||||| ||| ||| ||||||||||||| || || |||||||||| |||| |||| | ||||| |||||||| |
|
|
| T |
11885720 |
taaacacgttgaagttctgtgttggtgatcattgcaacattttccagctcaatcgcacaaataccataccgacttgtatccgtgagttcataaaggatcg |
11885819 |
T |
|
| Q |
257 |
taggattggattcccagggttcaaaaacttaaattattcacaagatctgaagtcgtccaagcacgcgttggagatgttcataaatcctgctgatctcaca |
356 |
Q |
| |
|
| |||||||||||||||||| || ||| ||| ||||||||| || |||| | ||| |||||| | |||||||||| ||| ||| || || |||| || |
|
|
| T |
11885820 |
tttgattggattcccagggttgaagaacctaacgtattcacaatatttgaattggtcgaagcacacattggagatgtacatggatcttgttgttctctca |
11885919 |
T |
|
| Q |
357 |
ctgtggcaggaacggttgttgaattactccgtggatgacattgttaaaataattcttggattc |
419 |
Q |
| |
|
| |||| || || |||| |||||| |||| |||||| | || ||||||| | |||||||||| |
|
|
| T |
11885920 |
cggtgggagcaatggttcttgaatgactcggtggataagatagttaaaaaatgtcttggattc |
11885982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 11876198 - 11876148
Alignment:
| Q |
410 |
tcttggattctgggtgcagctgaaagaagacgttatgatgagcgattggag |
460 |
Q |
| |
|
|||||||||| ||||| ||||| |||| || |||||||||||||||||||| |
|
|
| T |
11876198 |
tcttggattcagggtgaagctggaagacgaggttatgatgagcgattggag |
11876148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University