View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17800_low_2 (Length: 263)
Name: NF17800_low_2
Description: NF17800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17800_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 4172073 - 4171836
Alignment:
| Q |
11 |
gaacctgtggaacttcactcacccttttcaagaatgggtggagtgtacttgattccattggagtagcaaattacctcagaactcaatatttagaaattca |
110 |
Q |
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| T |
4172073 |
gaaccggtggaacttcactcacccttttcaagaatgggtggagtgtacttgattccattggagtagcaaattacctcagaactcaatatttagaaattca |
4171974 |
T |
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| Q |
111 |
agggtaacttaatttgttagttttaatttttatcacttgcctggttgcacaatgcatatattagctgagcttgagctggttcataatatcagctgtacag |
210 |
Q |
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| T |
4171973 |
agggtaacttaatttgttagttttaatttttatcacttgcctggttgcacaatgcatatattagctgagcttgagctggttcataatatcagctgtacag |
4171874 |
T |
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| Q |
211 |
gatggtggtgaagtctgaggatggaagagaactacgtg |
248 |
Q |
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| T |
4171873 |
gatggtggtgaagtctgaggatggaagagaactacgtg |
4171836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 4176215 - 4176068
Alignment:
| Q |
17 |
gtggaacttcactcacccttttcaagaatgggtggagtgtacttgattccattggagtagcaaattacctcagaactcaatatttagaaattcaagggta |
116 |
Q |
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| T |
4176215 |
gtggaacttcactcaccctttccaaaaatgggtggagtgctcttgattcaattggagtagcaaattatctcagaactcaatatttagaaattcaagggta |
4176116 |
T |
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| Q |
117 |
acttaatttgtta-gttttaatttttatcacttgcctggttgcacaat |
163 |
Q |
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| T |
4176115 |
atttaattcgttacctttttatttttatcccttgccttgttgcacaat |
4176068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 4176044 - 4175998
Alignment:
| Q |
202 |
gctgtacaggatggtggtgaagtctgaggatggaagagaactacgtg |
248 |
Q |
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| T |
4176044 |
gctgtacaggatagtgctgaaatctgaggatggaaaagaactacgtg |
4175998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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