View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17800_low_4 (Length: 244)
Name: NF17800_low_4
Description: NF17800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17800_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 2660649 - 2660407
Alignment:
| Q |
6 |
acagagtaggtggtactatgtgtgtttggttggttgcattagttaagtatgtactacatgagtagggttacactctgaatctattgaatgtttcaatgct |
105 |
Q |
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| T |
2660649 |
acagagtaggtggtactatgtgtgtttggttggtttcattggttaagtatgtactgcatgagtagggttacactctgaatctattgaatgtttcaatgct |
2660550 |
T |
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| Q |
106 |
tatgaagttgcataccataacataaacatttcaataagtgtatttattgggtaccaagatttgaaatggtgatggtgcttcgcatg----ctagttagca |
201 |
Q |
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| T |
2660549 |
tatgaagttgcataccataacataaacatttcaataagtgtattttttgggtaccaagatttgaaatggtgatggtgcttcgcatgctagctagttagca |
2660450 |
T |
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| Q |
202 |
attggagtgaaaacctgtataatttatgaaaatttgcatgaaa |
244 |
Q |
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| T |
2660449 |
attggagtgaaaacctgtattatttatgaaaatttgcatgaaa |
2660407 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 43660953 - 43661034
Alignment:
| Q |
96 |
tttcaatgcttatgaagttgcataccataacataaacatttcaataagtgtatttat--tgggtaccaagatttgaaatggt |
175 |
Q |
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| T |
43660953 |
tttcaatgcttatgaagctgcataccataacataaacatttcaataagtgtggttattatgggcacctagatttgaaatggt |
43661034 |
T |
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