View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17800_low_6 (Length: 236)
Name: NF17800_low_6
Description: NF17800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17800_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11902106 - 11902336
Alignment:
| Q |
1 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggg |
100 |
Q |
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| T |
11902106 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgttatgag |
11902205 |
T |
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| Q |
101 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11902206 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggt |
11902305 |
T |
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| Q |
201 |
gttgaagatcttatcgcatgttgatgatgtc |
231 |
Q |
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| T |
11902306 |
gttgaagatcttatcgcatgttgatgttgtc |
11902336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11860451 - 11860218
Alignment:
| Q |
1 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggg |
100 |
Q |
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| T |
11860451 |
tttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttatggg |
11860352 |
T |
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| Q |
101 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaa |
197 |
Q |
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| T |
11860351 |
aaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaa |
11860252 |
T |
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| Q |
198 |
ggtgttgaagatcttatcgcatgttgatgatgtc |
231 |
Q |
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| T |
11860251 |
ggtgtcgaagatcttatcacaagttgatgttgtc |
11860218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11732096 - 11731882
Alignment:
| Q |
1 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggg |
100 |
Q |
| |
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||||||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||| |
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| T |
11732096 |
tttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtggg |
11731997 |
T |
|
| Q |
101 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggt |
200 |
Q |
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| T |
11731996 |
atagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggt |
11731897 |
T |
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| Q |
201 |
gttgaagatcttatc |
215 |
Q |
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||||||||||||||| |
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| T |
11731896 |
gttgaagatcttatc |
11731882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11828316 - 11828090
Alignment:
| Q |
1 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggg |
100 |
Q |
| |
|
||||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || ||||||||||| | |
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| T |
11828316 |
tttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgtg |
11828217 |
T |
|
| Q |
101 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaa |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| ||| || || | ||||||| |
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| T |
11828216 |
aaagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaa |
11828117 |
T |
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| Q |
198 |
ggtgttgaagatcttatcgcatgttga |
224 |
Q |
| |
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||||| |||||||||||| || ||||| |
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| T |
11828116 |
ggtgtcgaagatcttatcacaagttga |
11828090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12039216 - 12038986
Alignment:
| Q |
1 |
tttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggg |
100 |
Q |
| |
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||||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||| | |
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| T |
12039216 |
tttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttgttatgag |
12039117 |
T |
|
| Q |
101 |
aaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | |||| | |||| |||||||||||||| | ||| | ||| |||| | |||||||| |
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| T |
12039116 |
aaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggt |
12039017 |
T |
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| Q |
201 |
gttgaagatcttatcgcatgttgatgatgtc |
231 |
Q |
| |
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||| ||||||||||| || ||||||| |||| |
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| T |
12039016 |
gttaaagatcttatcacaggttgatgttgtc |
12038986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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