View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17801_high_1 (Length: 393)
Name: NF17801_high_1
Description: NF17801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17801_high_1 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 11153966 - 11154298
Alignment:
| Q |
6 |
caaagggaaacgaattcagagccactcttaacaaaaagattgattcattcttattatatgatatacacacgccgagaatcagtcaagtttcaaattttta |
105 |
Q |
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| T |
11153966 |
caaagggaaacgaattcggagccactctttacaaaaagattgattcattcttattatatgatatacacacgccaagaatcagtcaagtttcaaattttta |
11154065 |
T |
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| Q |
106 |
tcaagtgaagaaagtagtaactcaataattctgattttgttaagttatatatagaaaattttcttatagataatttattctttgcatgggattaaatgta |
205 |
Q |
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| T |
11154066 |
tcaagtgaagaaagtagtaactcaataattctgattttgttaagttatatatagaaaattttcttatagataatttattctttgcatgaaattaaatgta |
11154165 |
T |
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| Q |
206 |
taaggtgtaccactcttgtttatctannnnnnngttgttgtgtaatattcaacttccaagtgattcatgtgaagaattgaaagtttcaaatcccacagaa |
305 |
Q |
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| T |
11154166 |
taaggtgtaccactcttgtttatctatttttttgttgttgtgtaatattcaacttccaagtgattcatgtgaagaattgaaagtttcaaatcccacagaa |
11154265 |
T |
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| Q |
306 |
agcatagaatatgatatgcaatttatacattac |
338 |
Q |
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| T |
11154266 |
agcatagaatatgatatgcaatttatacattac |
11154298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 14556395 - 14556341
Alignment:
| Q |
243 |
ttgtgtaatattcaacttccaagtgattcatgtgaagaattgaaagtttcaaatc |
297 |
Q |
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| T |
14556395 |
ttgtgtaatattcaactacaaagtgattcatgtgaagaattgaaagtttcaaatc |
14556341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 14556543 - 14556482
Alignment:
| Q |
90 |
aagtttcaaatttttatcaagtgaagaaagtagtaactcaataattctgattttgttaagtt |
151 |
Q |
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| T |
14556543 |
aagtttaaaatttttatcaaatgaagaaactagtaactcgatcattttgattttgttaagtt |
14556482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 86785 - 86718
Alignment:
| Q |
164 |
ttttcttatagataatttattctttgcatgggattaaatgtataaggtgtaccactcttgtttatcta |
231 |
Q |
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| T |
86785 |
ttttattatagataatttattctttgcaggggattaaatgtataaggtgtaccactcttgtttatcta |
86718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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