View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17801_low_2 (Length: 376)
Name: NF17801_low_2
Description: NF17801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17801_low_2 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] scaffold0417 (1 HSPs) |
| |
|
| [»] scaffold0039 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| |
|
| [»] scaffold0190 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 19625519 - 19625253
Alignment:
| Q |
16 |
aagtagataaataagtcccttaattatgagtcctcattattaatgcatatttttagttaggct---------------atcgtgtattattacaataagg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19625519 |
aagtagataaataagtcccttaattttgagtcctcattattaatgcatatttttagttaggcttgggacttttgtaagatcgtgtattattacaataagg |
19625420 |
T |
|
| Q |
101 |
caaatatctgccatggttttcaacctctaaatgccatttaagctgttactaccgttgtgtcaaaatcataataaaatgcctnnnnnnnnnntcataacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |
|
|
| T |
19625419 |
caaatatctgccatggttttcaacctctaaatgccatttaagctgttactactgttgtgtcaaaatcataataaaatgcct-caaaaaaaatcataataa |
19625321 |
T |
|
| Q |
201 |
aaatactacctctgttttaaattatacgctttggaaaacaaattgtttcaaattatatgttgttttat |
268 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19625320 |
aaatactacctctgttctaaattatacgctttggaaaacaaattgtttgaaattatatgttattttat |
19625253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 19605984 - 19605877
Alignment:
| Q |
269 |
caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaac |
368 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19605984 |
caatttcatccaatcttcacaaactacaacaacaattcaaaccccaataacatacaaacatatataatcatatataaagtgaatttacacatgtttgaac |
19605885 |
T |
|
| Q |
369 |
aataatca |
376 |
Q |
| |
|
|||||||| |
|
|
| T |
19605884 |
aataatca |
19605877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 10112516 - 10112413
Alignment:
| Q |
273 |
ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata |
372 |
Q |
| |
|
|||||| || |||| || || ||| |||| ||| ||| ||||| ||||| ||||||||||||||||||||| |||||| | | ||||||||| |||||| |
|
|
| T |
10112516 |
ttcattgaaacttctcagacaacaccaacaattgaaaccccaagaacatacaaacatatataatcatatatcaagtgattagaaacatgtttggacaata |
10112417 |
T |
|
| Q |
373 |
atca |
376 |
Q |
| |
|
|||| |
|
|
| T |
10112416 |
atca |
10112413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 17959778 - 17959882
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| |||||||||| || ||| ||||||| |||| || || |||||||| |||| ||| | | ||||||||||| |||||||| |||||| |
|
|
| T |
17959778 |
tttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaagatacaaacataaataagcatttgtgaagtgaatttaaacatgtttcaacaat |
17959877 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
17959878 |
aatca |
17959882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 20148517 - 20148630
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt |
362 |
Q |
| |
|
|||| ||| |||||||||| |||||| ||| || ||| | ||||||||||||| | ||| |||||||||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
20148517 |
ttttctcattttcattcaaacttcactaacaaccacaccaattcaaatcccaacagcatacaaacatatatactcatttatgaagtgaatttaaacatgt |
20148616 |
T |
|
| Q |
363 |
ttgaacaataatca |
376 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
20148617 |
tccaacaataatca |
20148630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 16196543 - 16196635
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaattta |
355 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| || ||| |||||||| ||||| ||||| |||| ||||||||||| ||| ||||||||||| |
|
|
| T |
16196543 |
ttttctcattttcattcaaacttcacaaacaaccacactgattcaaaccccaacaacatataaacttatataatcatttatgaagtgaattta |
16196635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 16175156 - 16175229
Alignment:
| Q |
303 |
attcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatca |
376 |
Q |
| |
|
||||||| ||||| ||||| ||||||| ||||||||| ||| ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
16175156 |
attcaaaccccaacaacatacaaacatttataatcatttatgaagtgaaattaaacatgttccaacaataatca |
16175229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 26132604 - 26132696
Alignment:
| Q |
283 |
cttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatca |
376 |
Q |
| |
|
|||||||||| |||||||| |||||||||| || ||||| |||||||||||||||| ||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
26132604 |
cttcacaaacaacaacaacaattcaaatcc-aacaacataaaaacatatataatcatttatcaaatgaatttagacatgtttcaacaataatca |
26132696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 23595810 - 23595729
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatata |
344 |
Q |
| |
|
|||| ||| |||| ||||| ||||||||| |||||||| ||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
23595810 |
ttttctcattttctttcaaacttcacaaaaaacaacaacaattcaaaccccaacaacatacaaacatatataatcatatata |
23595729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 37279976 - 37280066
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacga---ttcaaatcccaataacattcaaacatatataatcatatataaagtga |
350 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| |||||||| | |||||| ||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
37279976 |
ttttctcattttcattcaaacttcacaaacaacaacaacaacaattcaaaccccaacaacatacaaacatatataatcatatatcaagtga |
37280066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 13456885 - 13456986
Alignment:
| Q |
275 |
cattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataat |
374 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||| ||||| ||||| ||| | ||| ||||||| ||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
13456885 |
cattcaaacttcacaaacaaccacacaaattcaaaccccaacaacatacaagcttatgtaatcatttatgaagtgaatttaaacatgttccaacaataat |
13456984 |
T |
|
| Q |
375 |
ca |
376 |
Q |
| |
|
|| |
|
|
| T |
13456985 |
ca |
13456986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 17364081 - 17364185
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| |||||||||| || ||| | ||||| |||| ||||| |||||||| |||| ||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
17364081 |
tttcattcaaacttcacaaacaaccacacaaagtcaaaccccatcaacatgcaaacataaataaacatttattaagtgaatttaagcatgtttcaacaat |
17364180 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
17364181 |
aatca |
17364185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 22545764 - 22545831
Alignment:
| Q |
269 |
caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataat |
336 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22545764 |
caatttcatccaaacttcacaaacaacaacaacaattcaaaccccaataacatacaaacatatataat |
22545831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 14354211 - 14354315
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| |||||||||| || ||| ||||||| |||| |||| ||||||||||||| ||| ||||||||||||| | |||||||| ||||| |
|
|
| T |
14354211 |
tttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaacagacaaacatatataaacatttataaagtgaattcaaacatgtttcaacaag |
14354310 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
14354311 |
aatca |
14354315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 23299570 - 23299673
Alignment:
| Q |
273 |
ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata |
372 |
Q |
| |
|
||||||||| ||||| |||| || ||| | ||||||| ||| ||||| |||||||| |||| ||| ||| ||||||||||| |||||||| ||||||| |
|
|
| T |
23299570 |
ttcattcaaacttcaaaaacaaccacaccaattcaaactccatcaacatacaaacataaataaacatttatgaagtgaatttaaacatgtttcaacaata |
23299669 |
T |
|
| Q |
373 |
atca |
376 |
Q |
| |
|
|||| |
|
|
| T |
23299670 |
atca |
23299673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 3515 - 3628
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt |
362 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| | ||| | ||||||| ||||| ||||| ||| ||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
3515 |
ttttctcattttcattcaaacttcacaaaccagcacaccaattcaaaccccaacaacatacaagcatatataatcatttatgaagtgaatttgaacatgt |
3614 |
T |
|
| Q |
363 |
ttgaacaataatca |
376 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
3615 |
tccaacaataatca |
3628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 106154 - 106062
Alignment:
| Q |
284 |
ttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatca |
376 |
Q |
| |
|
|||||| || ||| |||| ||||||| ||| ||||| |||| |||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
106154 |
ttcacagacaacaccaacaattcaaacttcaacaacatacaaatatatataatcatatatcaagtgaatttagacatgtttgaacaacaatca |
106062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 25263175 - 25263289
Alignment:
| Q |
263 |
ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatccc-aataacattcaaacatatataatcatatataaagtgaatttacacatg |
361 |
Q |
| |
|
|||| ||| ||| |||||| |||||||||| || ||| | |||||| ||| || ||||| ||||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
25263175 |
ttttctcatttttattcaaacttcacaaacaaccacaccacttcaaacccccaacaacatacaaacatatataatcatttatgaagtgaatttaaacatg |
25263274 |
T |
|
| Q |
362 |
tttgaacaataatca |
376 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
25263275 |
ttccaacaataatca |
25263289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 15538955 - 15539059
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| |||||||||| | ||| | ||||||| |||| ||||| |||||||| || ||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
15538955 |
tttcattcaaacttcacaaacaatcacaccaattcaaaacccatcaacatacaaacataatcaaacatttataaagtgaatttaaacatgtttcaacaat |
15539054 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
15539055 |
aatca |
15539059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 19614326 - 19614425
Alignment:
| Q |
277 |
ttcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatca |
376 |
Q |
| |
|
||||| |||||||||| | ||| | ||||||| |||| ||||| ||||||| ||||| ||| ||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
19614326 |
ttcaaacttcacaaacaatcacatcaattcaaaccccatcaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaacaataatca |
19614425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 19632159 - 19632055
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| ||||| |||| || ||| | ||||||| |||| ||||| ||||||| |||| ||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
19632159 |
tttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacatacaaacatgcataaacatttatgaagtgaatttaagcatgtttcaacaat |
19632060 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
19632059 |
aatca |
19632055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 14305606 - 14305499
Alignment:
| Q |
269 |
caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaac |
368 |
Q |
| |
|
||||||||| ||| |||| ||||| |||||||| ||||||| ||| ||||| ||||||||||||||||| || |||||| | | ||| |||||| | |
|
|
| T |
14305606 |
caatttcatccaaacttctcaaacaacaacaacaattcaaacttcaacaacatacaaacatatataatcatttaccaagtgattagaaacaggtttgacc |
14305507 |
T |
|
| Q |
369 |
aataatca |
376 |
Q |
| |
|
|||||||| |
|
|
| T |
14305506 |
aataatca |
14305499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 2547317 - 2547213
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| |||||||||| || ||| | ||||||| |||| ||||| |||||||| | || || || ||||||||||| |||||||| ||||| |
|
|
| T |
2547317 |
tttcattcaaacttcacaaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaac |
2547218 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
2547217 |
aatca |
2547213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 30419 - 30359
Alignment:
| Q |
303 |
attcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtt |
363 |
Q |
| |
|
||||||| ||||| ||||| | ||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
30419 |
attcaaaccccaacaacataccaacatatataatcatttatgaagtgaatttaaacatgtt |
30359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 154904 - 155008
Alignment:
| Q |
272 |
tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat |
371 |
Q |
| |
|
|||||||||| ||||| |||| | ||| ||||| ||| | || |||||| ||||||| ||||| ||| ||| ||||||||||| |||||||| ||| || |
|
|
| T |
154904 |
tttcattcaaacttcaaaaacaatcacaccgatttaaacctcattaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaaccat |
155003 |
T |
|
| Q |
372 |
aatca |
376 |
Q |
| |
|
||||| |
|
|
| T |
155004 |
aatca |
155008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 1623 - 1726
Alignment:
| Q |
273 |
ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata |
372 |
Q |
| |
|
||||||||| ||||| |||| || ||| | |||||||||||| ||||| |||||| ||| || ||| ||| ||||||||||| ||| |||| ||||| | |
|
|
| T |
1623 |
ttcattcaaacttcataaacaaccacaccaattcaaatcccataaacatacaaacacatacaaacatttatgaagtgaatttaaacaagtttcaacaaca |
1722 |
T |
|
| Q |
373 |
atca |
376 |
Q |
| |
|
|||| |
|
|
| T |
1723 |
atca |
1726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University