View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17801_low_3 (Length: 327)
Name: NF17801_low_3
Description: NF17801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17801_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 49311916 - 49312216
Alignment:
| Q |
12 |
aggagcagagagcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatg |
111 |
Q |
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|||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49311916 |
aggaccagaaagcccaaattgacgtcgactgcaaaggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatg |
49312015 |
T |
|
| Q |
112 |
acaataaagactaaagaattgcattcaagagatttcatgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttg |
211 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49312016 |
gcagtaaagactaaagaattgcatttaagagatttcatgctatgacacacatacctctccaccgttataaggttcagttggttatgaggccagactcttg |
49312115 |
T |
|
| Q |
212 |
gtgaatcatctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49312116 |
gtgaatcatctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcgactgtttcaggatcatcacctctagaaat |
49312215 |
T |
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| Q |
312 |
t |
312 |
Q |
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| |
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| T |
49312216 |
t |
49312216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 29913358 - 29913648
Alignment:
| Q |
22 |
agcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatgacaataaaga |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29913358 |
agcccaaattgacgtcgactacaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatgacagtaaaga |
29913457 |
T |
|
| Q |
122 |
ctaaagaattgcattcaagagatttcatgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaatcatc |
221 |
Q |
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||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||| |
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| T |
29913458 |
ctaaataatttcatttaagagatttcatgctatgacacacgtacctctctaccgttataaggttcagttggttatgaggttagactcttggagaataatc |
29913557 |
T |
|
| Q |
222 |
tataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaatt |
312 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
29913558 |
tataattacaacagatgattccaaacccaaaatgccttccaaatctttgcatttagtatcgactgtttcaggatcatcacctctagaaatt |
29913648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 6659613 - 6659902
Alignment:
| Q |
22 |
agcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaac--taatgacaataaa |
119 |
Q |
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|||||||||||||| | || || ||||||||| |||||||||||||||||||||||||||| || || |||| || |||||| |||| ||| |||| |
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| T |
6659613 |
agcccaaattgacgcctgctacatgggaagtatgtgtacctgcaatatcttaaaacttaatacagagagaatgcatcaactcaaaaataataacagtaaa |
6659712 |
T |
|
| Q |
120 |
gactaaagaattgcattcaagagattt-catgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaatc |
218 |
Q |
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|||||||||||||| | |||||| || ||||||| || || |||| || ||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
6659713 |
gactaaagaattgcttgtaagagaattgcatgctacga---actgacctttcaaccactataaggttcagtttgttatgaggccagactctcacagaatc |
6659809 |
T |
|
| Q |
219 |
atctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaat |
311 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||| |
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| T |
6659810 |
gtctataattacaacagacgattccatacccaaaacgccttccaaatctttgcttttagtatcagctgtttcagcatcatcacctctagaaat |
6659902 |
T |
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