View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17801_low_4 (Length: 279)
Name: NF17801_low_4
Description: NF17801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17801_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 46942039 - 46941811
Alignment:
| Q |
16 |
taactcacaaataactcaccgtaaatatccttcttctataacgtttatgtttaatcaatcgaactcaaatcactgttagatcaagactgagaaactgaga |
115 |
Q |
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| T |
46942039 |
taactcacaaacaactcaccgtaaatatccttcttctataacgtttatgtttaatcaatcgaactcaaatcactgttagatcaagactgagaaactgaga |
46941940 |
T |
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| Q |
116 |
aatttaagctttcttaataaataattacaaactcggccaacttgtccaaaatagattaataaggtaattggatatagaaattaattaaacgtttaatgaa |
215 |
Q |
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| T |
46941939 |
aattt--------------------tacaaactcggccaacttgtccaaaatagattaataaggtatttggatatagaaattaattaaacgtttaatgaa |
46941860 |
T |
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| Q |
216 |
aaaatagttatgatttaagcaaattaagaataccatctgcacttctctc |
264 |
Q |
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| T |
46941859 |
aaaatagttatgatttaagcaaattaagaatatcatctgcacttctctc |
46941811 |
T |
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