View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17802_low_2 (Length: 468)
Name: NF17802_low_2
Description: NF17802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17802_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 45294846 - 45294413
Alignment:
| Q |
21 |
acaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294846 |
acaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctc |
45294747 |
T |
|
| Q |
121 |
caccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttatagacaagcttgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
45294746 |
caccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgt |
45294647 |
T |
|
| Q |
221 |
atggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294646 |
atggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccc |
45294547 |
T |
|
| Q |
321 |
ttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294546 |
ttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgt |
45294447 |
T |
|
| Q |
421 |
tgatgatcaaggatacccttcatggatctctgct |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45294446 |
tgatgatcaaggatacccttcatggatctctgct |
45294413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 45303806 - 45303373
Alignment:
| Q |
21 |
acaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303806 |
acaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctc |
45303707 |
T |
|
| Q |
121 |
caccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttatagacaagcttgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
45303706 |
caccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgt |
45303607 |
T |
|
| Q |
221 |
atggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303606 |
atggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccc |
45303507 |
T |
|
| Q |
321 |
ttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45303506 |
ttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgt |
45303407 |
T |
|
| Q |
421 |
tgatgatcaaggatacccttcatggatctctgct |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45303406 |
tgatgatcaaggatacccttcatggatctctgct |
45303373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 23 - 451
Target Start/End: Complemental strand, 45283456 - 45283028
Alignment:
| Q |
23 |
aggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcca |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283456 |
aggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcca |
45283357 |
T |
|
| Q |
123 |
ccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttatagacaagcttgtat |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
45283356 |
ccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgctgatatgaggaattggttgagtgcggttatctcttacagacaagcttgtat |
45283257 |
T |
|
| Q |
223 |
ggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccctt |
322 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283256 |
ggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgccctt |
45283157 |
T |
|
| Q |
323 |
gacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283156 |
gacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttg |
45283057 |
T |
|
| Q |
423 |
atgatcaaggatacccttcatggatctct |
451 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
45283056 |
acgatcaaggatacccttcatggatctct |
45283028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 23 - 451
Target Start/End: Complemental strand, 45271682 - 45271254
Alignment:
| Q |
23 |
aggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcca |
122 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271682 |
aggctcaccactgagtatggaaagaaaaatggtgccaagatggctcttgatgactgcaaagacttgatgcaattcgctttggacagtcttgacctctcca |
45271583 |
T |
|
| Q |
123 |
ccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttatagacaagcttgtat |
222 |
Q |
| |
|
||| ||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
45271582 |
acaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtat |
45271483 |
T |
|
| Q |
223 |
ggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccctt |
322 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| || || ||||||||| |
|
|
| T |
45271482 |
ggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgccctt |
45271383 |
T |
|
| Q |
323 |
gacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttg |
422 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271382 |
gacattgtgactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttg |
45271283 |
T |
|
| Q |
423 |
atgatcaaggatacccttcatggatctct |
451 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
45271282 |
acgatcaaggatacccttcatggatctct |
45271254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 23 - 454
Target Start/End: Complemental strand, 45275215 - 45274784
Alignment:
| Q |
23 |
aggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcca |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45275215 |
aggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaa |
45275116 |
T |
|
| Q |
123 |
ccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttatagacaagcttgtat |
222 |
Q |
| |
|
||| ||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| ||||| |
|
|
| T |
45275115 |
acaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtat |
45275016 |
T |
|
| Q |
223 |
ggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgccctt |
322 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
45275015 |
ggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgccctt |
45274916 |
T |
|
| Q |
323 |
gacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttg |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274915 |
gacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttg |
45274816 |
T |
|
| Q |
423 |
atgatcaaggatacccttcatggatctctgct |
454 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
45274815 |
acgatcaaggatacccttcatggatctctgct |
45274784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 38588716 - 38588654
Alignment:
| Q |
142 |
caacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctc |
204 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| |||||||| |
|
|
| T |
38588716 |
caacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctc |
38588654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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