View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17802_low_3 (Length: 340)
Name: NF17802_low_3
Description: NF17802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17802_low_3 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 325
Target Start/End: Complemental strand, 2974797 - 2974474
Alignment:
| Q |
2 |
gcaacacagaaagataatgaaacattgaaagaaacaacgtacattggtaataataaaaataattatgaactcaacaatgaaagaaatcactaggatgctt |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2974797 |
gcaacacaaaaagataatgaaacattgaaacaaacaacgtacattgataataatgaaaataattatgaactcaacaatgaaagaaatcactaggatgctt |
2974698 |
T |
|
| Q |
102 |
gtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaata |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2974697 |
gtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaata |
2974598 |
T |
|
| Q |
202 |
atcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattacaattt |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2974597 |
atcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattagaattt |
2974498 |
T |
|
| Q |
302 |
gtaatattttttccaagaccatta |
325 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
2974497 |
gtaatattttctccaagaccatta |
2974474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 325
Target Start/End: Complemental strand, 2935399 - 2935066
Alignment:
| Q |
2 |
gcaacacagaaagataatgaaac-attgaaagaaacaacgtacattggtaataataa------aaataattatgaactcaacaatgaaagaaatcactag |
94 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2935399 |
gcaacacaaaaagataatgaaaccattgaaacaaacaacgtacattgaaaataatactaatagaaataattatgaactcaacaatgaaagaaatcactag |
2935300 |
T |
|
| Q |
95 |
gatgcttgt---actacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggag |
191 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||| ||||| || |||||||| |||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
2935299 |
gaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggag |
2935200 |
T |
|
| Q |
192 |
tattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgat |
291 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
2935199 |
ttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgat |
2935100 |
T |
|
| Q |
292 |
attacaatttgtaatattttttccaagaccatta |
325 |
Q |
| |
|
|||| | | ||||| |||||| | |||||||||| |
|
|
| T |
2935099 |
attagattgtgtaacatttttccaaagaccatta |
2935066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 2938228 - 2937959
Alignment:
| Q |
15 |
ataatgaaacattgaaagaaacaacgtacattggtaataataaaaataattatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaa |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2938228 |
ataatgaaacattgaaacaaacaacgtacatt---------aacaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaa |
2938138 |
T |
|
| Q |
115 |
gacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttaga |
214 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| |||||| || ||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||| |
|
|
| T |
2938137 |
gacagaacaaactgattgaagtaaagtgagaataagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcaga |
2938038 |
T |
|
| Q |
215 |
gcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatat |
293 |
Q |
| |
|
| |||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2938037 |
gtagccttcaacttatgccaaggattactgcagaaagcatttaattctttgcaaagaatagagaattgagaactgatat |
2937959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 2996667 - 2996953
Alignment:
| Q |
15 |
ataatgaaac-attgaaagaaacaacgtacattggtaataata--aa----aataattatgaactcaacaatgaaagaaatcactaggatgcttgtacta |
107 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
2996667 |
ataatgaaaccattgaaacaaacaacttacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaa |
2996766 |
T |
|
| Q |
108 |
cttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacg |
207 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
2996767 |
cttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacg |
2996866 |
T |
|
| Q |
208 |
ccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatatt |
294 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||||||||| |
|
|
| T |
2996867 |
cctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatatt |
2996953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 2930095 - 2929776
Alignment:
| Q |
15 |
ataatgaaac-attgaaagaaacaacgtacattggtaataataaaaataa------ttatgaactcaacaatgaaagaaatca--ctaggatgcttgtac |
105 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
2930095 |
ataatgaaaccattgaaacaaacaacgtacattggtgataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtac |
2929996 |
T |
|
| Q |
106 |
tacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatca |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||| || | ||||||||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
2929995 |
aacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatca |
2929896 |
T |
|
| Q |
206 |
cgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattacaatttgtaa |
305 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||||| |||| ||||||| || |||||||| |||||||||||||||| |||||||||| ||| | ||| |
|
|
| T |
2929895 |
cgcctgagagtagccttcaacctatgccaaggattctaacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataa |
2929796 |
T |
|
| Q |
306 |
tattttttccaagaccatta |
325 |
Q |
| |
|
||| ||| | || ||||||| |
|
|
| T |
2929795 |
tatatttgcaaaaaccatta |
2929776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 83 - 325
Target Start/End: Complemental strand, 2927869 - 2927627
Alignment:
| Q |
83 |
agaaatcactaggatgcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgt |
182 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||| ||||| || ||||||||||||||| || ||||| ||||||||||||||||| | |
|
|
| T |
2927869 |
agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt |
2927770 |
T |
|
| Q |
183 |
gccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatg |
282 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||||||| | |||||| ||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
2927769 |
gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattg |
2927670 |
T |
|
| Q |
283 |
agaactgatattacaatttgtaatattttttccaagaccatta |
325 |
Q |
| |
|
||||||||| || || ||||| |||||| |||||||||||| |
|
|
| T |
2927669 |
agaactgattgtagaacgtgtaacatttttaccaagaccatta |
2927627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 2983655 - 2983387
Alignment:
| Q |
10 |
gaaagataatgaaac-attgaaagaaacaacgtacattggtaataat------aaaaataattatgaactcaacaatgaaagaaatcactaggatgcttg |
102 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2983655 |
gaaatataatgaaaccattgaaacaaacaacgtacatgggtgataatgagaataacaataattatgaactcaacaatgaaagaaatgactaggatgcttg |
2983556 |
T |
|
| Q |
103 |
tactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataa |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||||| | | |||||||||||||| |||| |
|
|
| T |
2983555 |
tactatttgcaagacagaacaaactgtttgaattatagtgagaacaagtagtaagactccagcaacggaagcagcaattttccaaggagtattgccataa |
2983456 |
T |
|
| Q |
203 |
tcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaaga |
271 |
Q |
| |
|
|||||||| |||| ||||||||||||| || |||||| ||||| |||||| |||||| ||| ||||| |
|
|
| T |
2983455 |
tcacgcctgagagtggccttcaacttattcctaggattattacaaaaagcatccaattcattggaaaga |
2983387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 100 - 325
Target Start/End: Original strand, 3003174 - 3003395
Alignment:
| Q |
100 |
ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaa |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||||| |||| || || ||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
3003174 |
ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa |
3003269 |
T |
|
| Q |
200 |
taatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattacaat |
299 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||| || ||||||| |||||||||||| ||||||||||| || || |
|
|
| T |
3003270 |
taatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaac |
3003369 |
T |
|
| Q |
300 |
ttgtaatattttttccaagaccatta |
325 |
Q |
| |
|
| |||||| ||| |||||||||||| |
|
|
| T |
3003370 |
gtataatatctttgccaagaccatta |
3003395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 2952624 - 2952433
Alignment:
| Q |
100 |
ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaa |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||||| |||| || | ||||||||||||||||||||||| ||||||||||| |||| | |
|
|
| T |
2952624 |
ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca |
2952529 |
T |
|
| Q |
200 |
taatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatatta |
295 |
Q |
| |
|
||||||||||| |||| || |||||||||| ||||||||| |||||| | ||||| | |||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
2952528 |
taatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatatta |
2952433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 2965320 - 2965111
Alignment:
| Q |
11 |
aaagataatgaaac-attgaaagaaacaacgtacattggtaataata--aa----aataattatgaactcaacaatgaaagaaatcactaggatgc---- |
99 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2965320 |
aaagataatgaaaccattgaaacaaacaacgtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcatta |
2965221 |
T |
|
| Q |
100 |
-----ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtat |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
2965220 |
ggttgttgtactacttgcaaga----acaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtac |
2965125 |
T |
|
| Q |
195 |
tgcaataatcacgc |
208 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
2965124 |
tgcagtaatcacgc |
2965111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 2658303 - 2658474
Alignment:
| Q |
51 |
ataataaa-aataattatgaactcaacaatgaaagaaatcactaggatgc------ttgtactacttgcaagacagaacaaactgtttgaattatagtga |
143 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2658303 |
ataataaacaataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtga |
2658402 |
T |
|
| Q |
144 |
gaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag |
215 |
Q |
| |
|
||| |||||| || |||||||||| ||||||| ||| | |||||||||| |||||||||||||||| |||| |
|
|
| T |
2658403 |
gaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag |
2658474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 2952733 - 2952657
Alignment:
| Q |
16 |
taatgaaac-attgaaagaaacaacgtacattggtaataataaaaataattatgaactcaacaatgaaagaaatcac |
91 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2952733 |
taatgaaaccattgaaacaaacaacgtacattgataataataataataattatgaactcaacaatgaaagaaatcac |
2952657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 2954809 - 2954726
Alignment:
| Q |
65 |
tatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaaca |
148 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||| || ||||| |||| |
|
|
| T |
2954809 |
tatgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca |
2954726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 2979521 - 2979376
Alignment:
| Q |
158 |
attccagcaatggaagcagcagtgtgccaagga--gtattgcaataatcacgccttagagcagccttcaactt------atgccaaggattcctacaata |
249 |
Q |
| |
|
|||||||||| |||||||||| | |||| |||| ||||||||| |||| |||| |||| ||||||||| || |||||||||||| ||| || | |
|
|
| T |
2979521 |
attccagcaacggaagcagcaatttgcctaggatcgtattgcaacgatcatgcctgagagaagccttcaagttcaactcatgccaaggattactataaaa |
2979422 |
T |
|
| Q |
250 |
agcattcaattctttgcaaagaatagagaaatgagaactgatatta |
295 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2979421 |
atcatttaaatctttgcaaagaatagagaaatgagaactgatatta |
2979376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 2986475 - 2986421
Alignment:
| Q |
49 |
taataataaaaataattatgaactcaacaatgaaagaaatcactaggatgcttgt |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2986475 |
taataataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt |
2986421 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 2954721 - 2954662
Alignment:
| Q |
212 |
agagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaaga |
271 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
2954721 |
agagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga |
2954662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 3003047 - 3003141
Alignment:
| Q |
2 |
gcaacacagaaagataatgaaacat--tgaaagaaacaacgtacattggt---aataataaaaataattatgaactcaacaatgaaagaaatcac |
91 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| |||||||||| | |||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
3003047 |
gcaacacaaaaagataatgaaacatattgaaacaaactacgtacattgatgataataataataataattatgaacttaacaatgaaagacatcac |
3003141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 2965070 - 2965006
Alignment:
| Q |
231 |
gccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatatta |
295 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2965070 |
gccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatatta |
2965006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 2658233 - 2658291
Alignment:
| Q |
11 |
aaagataatgaaacattgaaagaaacaacgtacattggtaataataaaaataattatga |
69 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
2658233 |
aaagataatgaaacattgaaacaaacaacgtacattggcgataataacaataataatga |
2658291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 2658491 - 2658593
Alignment:
| Q |
220 |
cttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattacaatttgtaatattttttccaaga |
319 |
Q |
| |
|
||| |||||| ||||||||||||||||| || | || || |||| |||||||||| |||||||| |||| ||||||||| |||| |||||| | |||| |
|
|
| T |
2658491 |
cttaaacttaggccaaggattcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaaga |
2658590 |
T |
|
| Q |
320 |
cca |
322 |
Q |
| |
|
||| |
|
|
| T |
2658591 |
cca |
2658593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 34533 - 34823
Alignment:
| Q |
11 |
aaagataatgaaacattgaaagaaacaacgtacattggtaataata--aa----aataattatgaactcaacaatgaaagaaatcactaggatgcttgta |
104 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34533 |
aaagataatgaaacattgaaacaaacagcgtaaattgataataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgta |
34632 |
T |
|
| Q |
105 |
ctacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatc |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
34633 |
ctacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatc |
34732 |
T |
|
| Q |
205 |
acgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatatta |
295 |
Q |
| |
|
|||||| |||| |||||||||| ||| ||||||||| |||||| | ||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
34733 |
acgcctgagagaagccttcaacctattccaaggattactacaaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatatta |
34823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 3339824 - 3339529
Alignment:
| Q |
2 |
gcaacacagaaagataatgaaacattgaaagaaacaacgtacattggtaataata--aa----aataattatga---actcaacaatgaaagaaatcact |
92 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
3339824 |
gcaacacaaaaagataatgaaacatggaaacaaacaacgtacattgataataatactaagagcaataattatgatgaactcaacaaagaaagaaatcact |
3339725 |
T |
|
| Q |
93 |
aggatgcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagt |
192 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3339724 |
aggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagt |
3339625 |
T |
|
| Q |
193 |
attgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaact |
288 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| |||||||||||||| ||||| || |||| || ||||||| |||| ||| |||||||||||| |
|
|
| T |
3339624 |
attgcaataatcacgcctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtctttgccaagagtagggaaatgagaact |
3339529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 290
Target Start/End: Complemental strand, 49619102 - 49618914
Alignment:
| Q |
101 |
tgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaat |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||| || || |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
49619102 |
tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat |
49619003 |
T |
|
| Q |
201 |
aatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactga |
290 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||| ||||| || || |||| ||||| ||||| | ||||||||||||||| |
|
|
| T |
49619002 |
aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactga |
49618914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 49614128 - 49613938
Alignment:
| Q |
100 |
ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaa |
199 |
Q |
| |
|
|||||| |||||||| || | |||||||| ||||| || || ||||| |||||| |||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
49614128 |
ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa |
49614029 |
T |
|
| Q |
200 |
taatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactga |
290 |
Q |
| |
|
|||||||| || |||| |||||||| |||||||||||| |||| || ||||||| |||| || ||||||||| | |||||||||| |
|
|
| T |
49614028 |
taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactga |
49613938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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