View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17803_high_2 (Length: 641)
Name: NF17803_high_2
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17803_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 157 - 624
Target Start/End: Original strand, 27771086 - 27771556
Alignment:
| Q |
157 |
ttccttgcctttttcctctatcaattttacctagtgaaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaacactct |
256 |
Q |
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| T |
27771086 |
ttccttgcctttttcctctatcaattttaccaagtgaaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaacactct |
27771185 |
T |
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| Q |
257 |
tcttttgtaccttgatttactactttctccttgtgatatctttgatgaactaacatccattgaacatccttcttcacaagaatcatcttcatcttcattc |
356 |
Q |
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| T |
27771186 |
tcttttgtaccttgatttactactttctccttgtgatatctttgatgaactaacatccattgaacatccttcttcacaagaatcatcttcatcttcattc |
27771285 |
T |
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| Q |
357 |
atattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaaacttcgtctctaatttcgatta |
456 |
Q |
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| T |
27771286 |
atattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaaacttcgtctctaatttcgatta |
27771385 |
T |
|
| Q |
457 |
ttctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgaaggcgcctttgaatcaactctactatgatgaatcattgcttcttccataac |
556 |
Q |
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| T |
27771386 |
ttctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgatggcgccttcgactcaactctactatgttgcatcattgcttcttccacaac |
27771485 |
T |
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| Q |
557 |
tatttgt---tcttctgaaaaagtttcagttcttgaaggaagttctataaccgtcgcgggaacttgaacat |
624 |
Q |
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| T |
27771486 |
tatttgttgctcttctaaaaaagtttcatttcttgaaggaagttctataattgtaaccggaacttgaacat |
27771556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 27770986 - 27771038
Alignment:
| Q |
56 |
tttatgcaatcttcacacaaaaaattggtctatctctcttcttaatatatcat |
108 |
Q |
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| T |
27770986 |
tttatgcaatcttcacacaaaaaattggtctgtctctcttcttaatatatcat |
27771038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 12617286 - 12617343
Alignment:
| Q |
193 |
aaaatcttccattagaaaacgatctcttcattgcaattggactcataacacaatgcaa |
250 |
Q |
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| T |
12617286 |
aaaatcttccacttgaaaatgatctcttcattgcaattggacttagcacacaatgcaa |
12617343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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