View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17803_high_3 (Length: 626)
Name: NF17803_high_3
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17803_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Complemental strand, 30782718 - 30782240
Alignment:
| Q |
9 |
agaagcaaaggagcaaacgcagaaaacatgacccatccattgtatcagttatccagattcctagtgatcgcgtaaacggctgacatataagtaaacacca |
108 |
Q |
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| T |
30782718 |
agaagcaaaggagcaaacgcagaaaacatgacccatccattgtatcagttatacagattcctagtgatcgcgtaaacggctgacatataagtaaacacca |
30782619 |
T |
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| Q |
109 |
ttgaaagtgttgcaaaccatattgccaattggaaaggaagatttagatacataaacttttggattatttaatggaa-gtgtaatatgaatcgatctcaat |
207 |
Q |
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| T |
30782618 |
ttgaaagtgttgcaaaccatatcgccaattggaaaggaagatttagatacataaacttttggattatttaatggaaggtgtaatatgaatcgatctcaat |
30782519 |
T |
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| Q |
208 |
ggatgacttagatacattaatgtgtgtaattttgtgtttcttaaatacaagaaattgatctgaaacttcacaaacttcttaatcacttccaatgatcaaa |
307 |
Q |
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| T |
30782518 |
ggatgacttagatacattaatgtgtgtaattttgtgtttcttaaatacaagaaattgatctgaaacttcacaaacttcttaatcacttccaatgaacaaa |
30782419 |
T |
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| Q |
308 |
tttggaaggnnnnnnnnnnntcatagttgtgtgtctcttaatgtatatttcgaacaaaaatatattcaagaaatacacttccaaaagtcttttaaaaata |
407 |
Q |
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| T |
30782418 |
tttggaagg--aaaaaaaaatcatagttgtgtgtctcttaatgtatatttcgaacaaaaatatattcgagaaatatacttccaaaaatcttttaaaaata |
30782321 |
T |
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| Q |
408 |
tggaatggacagagttgttttcttgaacggagtcagttgcaacaattccgtgttacaaaggcccatgaaaggagacccgac |
488 |
Q |
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| T |
30782320 |
tggaatggacagagttgttttcttgaacggagtcggttgcaacaattccgtgttacaaattcccatgaaaggagacccgac |
30782240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 519 - 609
Target Start/End: Complemental strand, 30782124 - 30782034
Alignment:
| Q |
519 |
caataacaagatagaactatgaagaagcataacctagtaagaagatcaagcaacaacaaagaaagttctctctttgaacatcgcttattgt |
609 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30782124 |
caataacaagatagaacaatgaagaagcataacctagtaagaagatcaagcaacaacaaagaaaattctctctttgaacatcgcttattgt |
30782034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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