View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17803_high_5 (Length: 331)

Name: NF17803_high_5
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17803_high_5
NF17803_high_5
[»] chr6 (13 HSPs)
chr6 (1-316)||(6239100-6239427)
chr6 (198-308)||(6259675-6259786)
chr6 (132-308)||(6234342-6234520)
chr6 (132-266)||(6253278-6253413)
chr6 (1-124)||(6226480-6226615)
chr6 (1-111)||(6234191-6234301)
chr6 (221-308)||(6248192-6248279)
chr6 (1-129)||(6247935-6248078)
chr6 (1-69)||(6253115-6253183)
chr6 (1-69)||(6280660-6280728)
chr6 (209-275)||(6226734-6226800)
chr6 (1-67)||(6272889-6272955)
chr6 (154-232)||(6248090-6248169)
[»] chr2 (1 HSPs)
chr2 (1-296)||(24469802-24470098)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 6239100 - 6239427
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagatt------------aatgttgtgatttaactgtatatatatgaaa 88  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||    
T  6239100 atgaaattaatcaactgaatatattgaagattataagaaataattgaatgaaagattaatgttgtgattaatgttgagatttaactgtatatatatgaaa 6239199  T
Q  89 agtttcctatagattttgcactacttgcggttctttgtggtggttctttgtggtagtgtagatgctattgtgctattttggggagtatatgtaagagaga 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6239200 agtttcctatagattttgcactacttgcggttctttgtggtggttctttgtggtagtgtagatgctattgtgctattttggggagtatatgtaagagaga 6239299  T
Q  189 tgtagatttagttgaccaggaaacttccatttactattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttcaatatattt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6239300 tgtagatttagttgaccaggaaacttccatttactattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttcaatatattt 6239399  T
Q  289 tcaataaattaataaaaatattaataat 316  Q
    |||||||||||||||||||| |||||||    
T  6239400 tcaataaattaataaaaataataataat 6239427  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 6259675 - 6259786
Alignment:
Q  198 agttgaccaggaaa-cttccatttactattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttcaatatattttcaataaa 296  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  6259675 agttgaccaggaaaactttcatttactattttcaaggttatcatttgtgaaccacatgcaaaacaaatgtacaatgtttgtgcaatatattttcaataaa 6259774  T
Q  297 ttaataaaaata 308  Q
    ||||||||||||    
T  6259775 ttaataaaaata 6259786  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 6234342 - 6234520
Alignment:
Q  132 ttctttgtggtagtgtagatgctattgtgctattttgggg-agtatatgtaagagagatgtagatttagttgaccaggaaa-cttccatttactattttc 229  Q
    |||||||||||||||| || | | |||||||||||||||| ||||||||| ||||||||||||  | |||||| ||||||| ||||||||||||||||||    
T  6234342 ttctttgtggtagtgttgaagatgttgtgctattttgggggagtatatgtgagagagatgtag--tcagttgatcaggaaaacttccatttactattttc 6234439  T
Q  230 aaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttc-aatatat-tttcaataaattaataaaaata 308  Q
    || |||||||||||||||||||||||||||||||||  |||| ||||||| || |||| |||||||||||||| |||||||    
T  6234440 aacgtgatcatttgtgaaccacatgcaaaacaaatgcacaatttttgttcaaaaatatatttcaataaattaaaaaaaata 6234520  T

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Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 6253278 - 6253413
Alignment:
Q  132 ttctttgtggtagtgtagatgctattgtgctatttt-ggggagtatatgtaagagagatgtagatttagttgaccaggaaa-cttccatttactattttc 229  Q
    ||||||||||||||||  | | |||||||||||||| ||||||| ||||| ||||||||||||||  | |||||||||||| |||||||||||||||||     
T  6253278 ttctttgtggtagtgttaaagatattgtgctatttttggggagtttatgtgagagagatgtagatcaa-ttgaccaggaaaacttccatttactattttt 6253376  T
Q  230 aaggtgatcatttgtgaaccacatgcaaaacaaatgt 266  Q
    || || |||||||||||||||||||||||||||||||    
T  6253377 aaagttatcatttgtgaaccacatgcaaaacaaatgt 6253413  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 6226480 - 6226615
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagattaatgttgt------------gatttaactgtatatatatgaaa 88  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| | ||    
T  6226480 atgaaattaatcaactgaataaattgaagattataagaaataattgaatgaaagattaatgttgtgattaatgttgagatttaactgtatatataggcaa 6226579  T
Q  89 agtttcctatagattttgcactacttgcggttcttt 124  Q
      |||||||| |||||||||||||||||||||||||    
T  6226580 gatttcctatggattttgcactacttgcggttcttt 6226615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6234191 - 6234301
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagattaatgttgtgatttaactgtatatatatgaaaagtttcctatag 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||  | ||||||||||| ||| |||||||||||||| | ||||||| | || |    
T  6234191 atgaaattaatcaactgaataaattgaagattataagaaataattgaattgatgattaatgttgagatataactgtatatataggcaaagtttaccatgg 6234290  T
Q  101 attttgcacta 111  Q
    || ||||||||    
T  6234291 atattgcacta 6234301  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 6248192 - 6248279
Alignment:
Q  221 actattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttcaatatattttcaataaattaataaaaata 308  Q
    ||||||| |||||| ||||||||||||||| | ||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||    
T  6248192 actatttccaaggttatcatttgtgaaccataggcaaaacaaatgtacaatgtttgtgaaatatattttcaataaattcataaaaata 6248279  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6247935 - 6248078
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaa---gattaatgttgtgatt------------taactgtatatatatg 85  Q
    ||||||||||||||| ||||  ||||||||||||| |||||| ||||||||||   ||||||||||||||||            |||||||||||||| |    
T  6247935 atgaaattaatcaactgaatgaattgaagattataggaaatatttgaatgaaattagattaatgttgtgattagtgttgagatttaactgtatatatagg 6248034  T
Q  86 aaaagtttcctatagattttgcactacttgcggttctttgtggt 129  Q
     |||||||||||  |||||||||||||||||||||||| |||||    
T  6248035 caaagtttcctagggattttgcactacttgcggttcttggtggt 6248078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6253115 - 6253183
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagattaatgttgtgatt 69  Q
    ||||||||||||||| | ||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  6253115 atgaaattaatcaactggataaattgaaaattataagaaataattgaatgaaagtttaatgttgtgatt 6253183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6280660 - 6280728
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagattaatgttgtgatt 69  Q
    ||||||||||||||| ||||  |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6280660 atgaaattaatcaactgaatgaattgaagattatgagaaatagttgaatgaaagattaatgttgtgatt 6280728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 6226734 - 6226800
Alignment:
Q  209 aaacttccatttactattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgttt 275  Q
    |||||||||||||||||||||||||| ||||| |||||||  |||||||||||||||| ||||||||    
T  6226734 aaacttccatttactattttcaaggttatcatgtgtgaactccatgcaaaacaaatgtacaatgttt 6226800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6272889 - 6272955
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaagattaatgttgtga 67  Q
    ||||| |||||||||  |||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  6272889 atgaatttaatcaactaaatgaattgaagattataagaaatatttgaatgaaagattaatgttgtga 6272955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 6248090 - 6248169
Alignment:
Q  154 tattgtgctattttgggg-agtatatgtaagagagatgtagatttagttgaccag-gaaacttccatttactattttcaag 232  Q
    |||||||||||||||||| ||||||||| ||||||||||||| | | ||||||||  |||||| |||||||||||||||||    
T  6248090 tattgtgctattttgggggagtatatgtgagagagatgtaga-tcaattgaccagtaaaactttcatttactattttcaag 6248169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 24469802 - 24470098
Alignment:
Q  1 atgaaattaatcaaccgaatatattgaagattataagaaataattgaatgaaaga----------------ttaatgttgtgatttaactgtatatatat 84  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||                ||||||||| |||||||||| |||||||     
T  24469802 atgaaattaatcaactgaatgaattgaagattataagaaatatttgaatgaaagactaatattgtgattagttaatgttgagatttaactgaatatatag 24469901  T
Q  85 gaaaagtttcctatagattttgcactacttgcggttctttgtggtggttctttgtggtagtgtagatgctattgtgctattttg-gggagtatatgtaag 183  Q
    |  ||||||||||| |||||||| |||||||||||||||||||||             ||||| || | ||||||||||||||| |||||||||||  ||    
T  24469902 gtcaagtttcctatggattttgccctacttgcggttctttgtggt-------------agtgttgaagatattgtgctattttgagggagtatatg--ag 24469986  T
Q  184 agagatgtagatttagttgaccaggaaa-cttccatttactattttcaaggtgatcatttgtgaaccacatgcaaaacaaatgttcaatgtttgttcaat 282  Q
    ||||||||||||  | |||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  24469987 agagatgtagatc-acttgaccaggaaaacttccatttactattt-ctaggttatcatttgtgaaccacatgcaaaacaaatgtacaatgtttgtgcaat 24470084  T

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