View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17803_high_8 (Length: 267)
Name: NF17803_high_8
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17803_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 1429175 - 1429408
Alignment:
| Q |
12 |
aagcaaagggaatttattattggtgcaccgtaaaagggaacaaagtagtgatcattgtatttgtatgttaaatggagctcatataaatggaataaagatg |
111 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1429175 |
aagcaaagggaacttaatattggtgcaccgtaaaagg-aacaaagtagtgatcattgtatttatatgttaaatggagctcatctaaatggaataaagatg |
1429273 |
T |
|
| Q |
112 |
aacttagaataacaagtgtatgattttttctttnnnnnnnnnnngtgtgatttcaattttacacaaaagtatctaaattcttctctcttcagtttttaaa |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1429274 |
aactcagaataacaagtgtatgattttttcttt-taaaaaaaatgtgtgatttcaattttacacaaaaatatctaaattcttctctcttcagtttttaaa |
1429372 |
T |
|
| Q |
212 |
ttttctttttgaatccaaacacaagagagagtgaatgt |
249 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1429373 |
ttttctttttgaatccaaacac--gagagagtgaatgt |
1429408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 1568015 - 1567937
Alignment:
| Q |
161 |
atttcaattttacacaaaagtatctaaattcttctctcttcagtttttaaattttctttttgaatccaaacacaagaga |
239 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||| |||||||||| |||||| |
|
|
| T |
1568015 |
atttccattttacacaaaagtctctaaattcttctctcctacatttttcaattttttttttcaatccaaacaaaagaga |
1567937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University