View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17803_low_12 (Length: 204)

Name: NF17803_low_12
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17803_low_12
NF17803_low_12
[»] chr1 (3 HSPs)
chr1 (1-191)||(4235457-4235647)
chr1 (76-191)||(49145050-49145165)
chr1 (120-191)||(49149597-49149668)
[»] chr7 (6 HSPs)
chr7 (109-191)||(29269827-29269909)
chr7 (109-191)||(28614683-28614765)
chr7 (109-191)||(28621282-28621364)
chr7 (109-191)||(28612936-28613018)
chr7 (109-178)||(29287673-29287742)
chr7 (109-191)||(29279227-29279309)
[»] chr5 (1 HSPs)
chr5 (115-181)||(35625842-35625908)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4235647 - 4235457
Alignment:
Q  1 cttttgtttaaaataccgtacaaaccgttcttcttctctatattcttctctatagaagaactatttgttttttgggatatcattaacatgggtaatgtgt 100  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4235647 cttttgtttagaataccgtacaacccgttcttcttctctatattcttctctatagaagaactatttgttttttgggatatcattaacatgggtaatgtgt 4235548  T
Q  101 tggccttgaattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4235547 tggccttgaattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 4235457  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 49145165 - 49145050
Alignment:
Q  76 gatatcattaacatgggtaatgtgttggccttgaattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaa 175  Q
    |||||||||| |||||||| ||  |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||    
T  49145165 gatatcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaa 49145066  T
Q  176 catgatatatgtgttc 191  Q
    ||| || |||||||||    
T  49145065 cataatctatgtgttc 49145050  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 49149668 - 49149597
Alignment:
Q  120 ttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49149668 ttgatggttaagctttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatctatgtgttc 49149597  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 29269909 - 29269827
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    ||||||||||||| |||||||| ||||||||||||| | ||||||||||||||  ||||||||| |||||||| |||||||||    
T  29269909 aattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacctaacatgatctatgtgttc 29269827  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 28614765 - 28614683
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||||||  |||  |||| |||||||| |||||||||    
T  28614765 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctaacatgatctatgtgttc 28614683  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 28621364 - 28621282
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    |||||||||||||||||||| |||||||||| ||| |||||| | ||||||||  ||||||||| ||||||||  ||||||||    
T  28621364 aattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacaccaaacctaacatgatcgatgtgttc 28621282  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 28612936 - 28613018
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    ||||||||  |||||||||||| |||||||| |||| ||||| ||||||||||  || |||||| |||||||| |||||||||    
T  28612936 aattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgacagcaaacctaacatgatctatgtgttc 28613018  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 29287742 - 29287673
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacat 178  Q
    ||||||||||||| |||||||| ||| ||||||||| ||||| |||| |||||  ||||||||| |||||    
T  29287742 aattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacaccaaacctaacat 29287673  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 29279309 - 29279227
Alignment:
Q  109 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttc 191  Q
    ||||||||||||| |||||||| | |||||| |||   |||| |||| |||||  ||||||||| |||||||| |||||||||    
T  29279309 aattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccacaccaaacctaacatgatctatgtgttc 29279227  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 35625842 - 35625908
Alignment:
Q  115 tgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgat 181  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||    
T  35625842 tgattttgatggttaaactttgcaattgatcgccagttcttgcacacggcaccgaaccaaacatgat 35625908  T

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