View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17803_low_9 (Length: 252)
Name: NF17803_low_9
Description: NF17803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17803_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36568704 - 36568463
Alignment:
| Q |
1 |
agaagcagtagcaaagaaaaattattatttttctccttttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggt |
100 |
Q |
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| T |
36568704 |
agaagcagtagcaaagaaaaattattatttttctccttttattttaaatcttgatttataagggaagtgtgaaagatgaaacaaaacaaaagaacaaggt |
36568605 |
T |
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| Q |
101 |
ctttannnnnnnnnnnnttgataatgatatatctacctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggacca |
200 |
Q |
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| T |
36568604 |
ctttagtgtgtgtgtgtttgataatgatatatctacctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggacca |
36568505 |
T |
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| Q |
201 |
atgagaatttgagaaggagtagggatccaatattgtcctttg |
242 |
Q |
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| T |
36568504 |
atgagaatttgagaaggagtagggatccaatattgtcctttg |
36568463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 21038358 - 21038455
Alignment:
| Q |
135 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaata |
232 |
Q |
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| T |
21038358 |
acctgcatgttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaata |
21038455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 41939469 - 41939369
Alignment:
| Q |
135 |
acctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatatt |
234 |
Q |
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| T |
41939469 |
acctgcatgttgttgaaacggttgaaggttttgttgcaaacagtgcaagaaaactgggtaggaccaacaaggatttgagcaggagaagggatccaatatt |
41939370 |
T |
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| Q |
235 |
g |
235 |
Q |
| |
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| |
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| T |
41939369 |
g |
41939369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 41937702 - 41937599
Alignment:
| Q |
129 |
atatctacctgcatgttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatcc |
228 |
Q |
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|||| ||||||||||||||| ||||||||||| || ||| | |||| |||||| || ||||| |||||||| || ||||| |||| ||| |||||||||| |
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| T |
41937702 |
atatatacctgcatgttgttgtatctattgaaggtcttgaaacaaagagggcatgaaaactgtgttggaccgattagaatctgagcaggggtagggatcc |
41937603 |
T |
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| Q |
229 |
aata |
232 |
Q |
| |
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|||| |
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| T |
41937602 |
aata |
41937599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 13518748 - 13518836
Alignment:
| Q |
144 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaata |
232 |
Q |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| |
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| T |
13518748 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaata |
13518836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 13608281 - 13608369
Alignment:
| Q |
144 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaata |
232 |
Q |
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||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| |
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| T |
13608281 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaata |
13608369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 22296658 - 22296719
Alignment:
| Q |
179 |
gcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctt |
240 |
Q |
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|||||||||||| ||||| |||||||| ||||||| ||| | ||| ||||||||||| |||| |
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| T |
22296658 |
gcaagagaactgtgttggtccaatgaggatttgagcaggtgaaggaatccaatattgacctt |
22296719 |
T |
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