View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_high_12 (Length: 347)
Name: NF17804_high_12
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 20649092 - 20648763
Alignment:
| Q |
1 |
aatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgctttagttg |
100 |
Q |
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| T |
20649092 |
aatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcctttagttg |
20648993 |
T |
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| Q |
101 |
gccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatttgatac |
200 |
Q |
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| T |
20648992 |
gccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatatgatac |
20648893 |
T |
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| Q |
201 |
tggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatactgatcat |
300 |
Q |
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| T |
20648892 |
tggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaataggagcatgaaagttttgtatactgatcat |
20648793 |
T |
|
| Q |
301 |
gttcccgagtatactgctcctgatgatgtc |
330 |
Q |
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| T |
20648792 |
gttccggagtatactgctcctgatgatgtc |
20648763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 20632993 - 20632667
Alignment:
| Q |
1 |
aatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgctttagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |
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| T |
20632993 |
aatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcctttcgctg |
20632894 |
T |
|
| Q |
101 |
gccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatttgatac |
200 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20632893 |
gccacgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatatgatac |
20632797 |
T |
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| Q |
201 |
tggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatactgatcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
20632796 |
tggtatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataagagcatgaaagttttgtatactgatcat |
20632697 |
T |
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| Q |
301 |
gttcccgagtatactgctcctgatgatgtc |
330 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
20632696 |
gttccggagtatactgctcctgatgatgtc |
20632667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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