View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_high_19 (Length: 317)
Name: NF17804_high_19
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 38244640 - 38244927
Alignment:
| Q |
9 |
gcaatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcaca |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38244640 |
gcaatgaaaatatcgatgatggtaaaattcacagcctaccacacgagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcaca |
38244739 |
T |
|
| Q |
109 |
aaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244740 |
aaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtctt |
38244839 |
T |
|
| Q |
209 |
cagattcaaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctgataagaaacatgcttcaatcaatgatgatg |
296 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
38244840 |
cagattcaaaagctcaatgatggaagaactacttttgttcctgttgttgcttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 38260942 - 38261227
Alignment:
| Q |
11 |
aatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaa |
110 |
Q |
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||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
38260942 |
aatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaa |
38261041 |
T |
|
| Q |
111 |
aatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttca |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38261042 |
aatttgctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttca |
38261141 |
T |
|
| Q |
211 |
gattcaaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctgataagaaacatgcttcaatcaatgatgatg |
296 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||| |
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| T |
38261142 |
gattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 47285733 - 47285507
Alignment:
| Q |
23 |
gatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatc |
122 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||| ||||||||||| ||| | ||||| | ||||||||| || | | ||| ||||| ||||| ||| || |
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| T |
47285733 |
gatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgctgctc |
47285634 |
T |
|
| Q |
123 |
atgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagct |
222 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||| |
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| T |
47285633 |
atgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagct |
47285537 |
T |
|
| Q |
223 |
caatgacggaataactacttttgttcctgt |
252 |
Q |
| |
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| |||| |||| ||||||| ||||| |||| |
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| T |
47285536 |
cgatgatggaacaactactcttgtttctgt |
47285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 47307290 - 47307067
Alignment:
| Q |
23 |
gatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatc |
122 |
Q |
| |
|
|||||||||| || |||||| ||| ||||||| ||| |||||||||| | ||| | | || |||||| || | | ||| |||||||||||||||| || |
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| T |
47307290 |
gatgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtc |
47307191 |
T |
|
| Q |
123 |
atgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagatt-caaaagc |
221 |
Q |
| |
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||| |||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||| || || |||| ||||||| |
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| T |
47307190 |
atg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatc-tccgattccaaaagc |
47307095 |
T |
|
| Q |
222 |
tcaatgacggaataactacttttgttcc |
249 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
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| T |
47307094 |
tcaatgatggaacaactacttttgttcc |
47307067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
132 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
231 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||||||||||| |||| ||| ||||||||||| ||| | |||||||||||||||||| || |
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| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
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| Q |
232 |
aataactacttttgttcctgttgttgctt |
260 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |
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| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 10299735 - 10299610
Alignment:
| Q |
132 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacg |
230 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| |||||||| |||| ||| ||||||||| ||| |||||||||||||||||||| |
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| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
231 |
gaataactacttttgttcctgttgtt |
256 |
Q |
| |
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||| ||||||||||||||| |||||| |
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| T |
10299635 |
gaacaactacttttgttccggttgtt |
10299610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 2589833 - 2589923
Alignment:
| Q |
167 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
257 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| |||||| |||||||| ||||||| |||| ||| |||||||||| ||||||| |
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|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttg |
2589923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 22222532 - 22222657
Alignment:
| Q |
132 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
231 |
Q |
| |
|
||||||||||||| || |||| | ||||||| |||||||||||||||| |||||||| | ||||||| | ||| ||||||||||| ||||||| || |
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|
| T |
22222532 |
caagtcactacaattttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttgg |
22222631 |
T |
|
| Q |
232 |
aataactacttttgttcctgttgttg |
257 |
Q |
| |
|
|| ||| || |||||| | ||||||| |
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|
| T |
22222632 |
aacaacaacatttgtttcagttgttg |
22222657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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