View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17804_high_2 (Length: 725)
Name: NF17804_high_2
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 658; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 725
Target Start/End: Original strand, 40093428 - 40094153
Alignment:
| Q |
1 |
ggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093428 |
ggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttagg |
40093527 |
T |
|
| Q |
101 |
tctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093528 |
tctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgt |
40093627 |
T |
|
| Q |
201 |
ttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093628 |
ttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaa |
40093727 |
T |
|
| Q |
301 |
actttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093728 |
actttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactg |
40093827 |
T |
|
| Q |
401 |
gcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatca |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093828 |
gcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatca |
40093927 |
T |
|
| Q |
501 |
cagacattgtaagtgttgcaaattttcaatgaagaagag-ttaaacatgagnnnnnnnntcttgatctatgatgtgactgcgacattaatcccatctcac |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |||||||||| |||||||| |
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|
| T |
40093928 |
cagacattgtaagtgttgcaaattttcaatgaagaagagtttaaacatgagaaaaaaaatcttgatctatgatgtgattgagacattaatctcatctcac |
40094027 |
T |
|
| Q |
600 |
agataccacgtgccacagtcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaa |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094028 |
agataccacgtgccacagtcgtttttgaaaccaaatggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaa |
40094127 |
T |
|
| Q |
700 |
aacagctaggaagtgtgtgtgcccat |
725 |
Q |
| |
|
||||| |||||||||||||||||||| |
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|
| T |
40094128 |
aacagataggaagtgtgtgtgcccat |
40094153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 47 - 725
Target Start/End: Original strand, 40062843 - 40063521
Alignment:
| Q |
47 |
gttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttc |
146 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || |||||||| |
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|
| T |
40062843 |
gttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttc |
40062942 |
T |
|
| Q |
147 |
cctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccact |
246 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
40062943 |
cctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccact |
40063042 |
T |
|
| Q |
247 |
atatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
346 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063043 |
atatgaaaaatgttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
40063142 |
T |
|
| Q |
347 |
ggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
446 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063143 |
ggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
40063242 |
T |
|
| Q |
447 |
tacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagag-ttaaac |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
40063243 |
tacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaac |
40063342 |
T |
|
| Q |
546 |
atgagnnnnnnnntcttgatctatgatgtgactgcgacattaatcccatctcacagataccacgtgccacagtcgtttttgaaaccaaacggaaacactc |
645 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||| ||||||||| || |||| |||||||||||||||||||| ||||||| |
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|
| T |
40063343 |
atga-aaaaaaaatcttgatctacgatgtgactgagacattaatcccatctcgcagataccatgtaccacgatcgtttttgaaaccaaacggcaacactc |
40063441 |
T |
|
| Q |
646 |
ttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgtgcccat |
725 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
40063442 |
ttgtattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctacaaaacagctagaaagtttgtgtgcccat |
40063521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 41 - 719
Target Start/End: Original strand, 40081187 - 40081865
Alignment:
| Q |
41 |
tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagact |
140 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || || |
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|
| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtct |
40081286 |
T |
|
| Q |
141 |
actttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaac |
240 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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|
| T |
40081287 |
acttaccctaagaaccaaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaat |
40081386 |
T |
|
| Q |
241 |
gccactatatgaaaaatgtttt-ttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattg |
339 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40081387 |
gccactatatgaaaaatgtttttttgctactaaccaatgtaatacatgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattg |
40081486 |
T |
|
| Q |
340 |
acttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactc |
439 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
40081487 |
acttcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactc |
40081586 |
T |
|
| Q |
440 |
atgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagag |
539 |
Q |
| |
|
||||||||| |||||||||| |||| | | ||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| || || || |
|
|
| T |
40081587 |
atgcaactatagaggaccttatacttcatctaaatgtcgcaagaactgtggaaaaccgtcacagacattgtaagtgttgcaaattttcaataaaaaaaag |
40081686 |
T |
|
| Q |
540 |
-ttaaacatgagnnnnnnnntcttgatctatgatgtgactgcgacattaatcccatctcacagataccacgtgccacagtcgtttttgaaaccaaacgga |
638 |
Q |
| |
|
||||||| | |||||||||||||||| |||| |||| ||||| ||||| ||||||||| || |||| |||||||||||||||||||| |
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|
| T |
40081687 |
tttaaaca--aagaaaataatcttgatctatgatgttactgagacaataatcgcatcttgcagataccatgtaccacgatcgtttttgaaaccaaacggc |
40081784 |
T |
|
| Q |
639 |
aacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgt |
719 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
40081785 |
aacactcttgtattgtttgaggaaaatggcggtgatccgacccaaatatcttttgctacaaaacagctggaaagtgtgtgt |
40081865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 294 - 512
Target Start/End: Complemental strand, 22012756 - 22012538
Alignment:
| Q |
294 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
393 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
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|
| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
|
| Q |
394 |
gatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaa |
493 |
Q |
| |
|
|||||||||| ||||| | || | ||| | | || || ||||||||||| || |||||| | | | || | ||||||| | || |||||||||||| |
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|
| T |
22012656 |
gatactggccaacatacatctctccgaattctggctgtactgactcatgcaattatagaggaacatattctgcatccaaatgcctcaagaattgtggaaa |
22012557 |
T |
|
| Q |
494 |
accatcacagacattgtaa |
512 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22012556 |
accatcacagacattgtaa |
22012538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 22012391 - 22012311
Alignment:
| Q |
639 |
aacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgt |
719 |
Q |
| |
|
|||||| ||||||||||||||||||| || || || || ||| |||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
22012391 |
aacacttttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgt |
22012311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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