View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_high_4 (Length: 430)
Name: NF17804_high_4
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 5051990 - 5052371
Alignment:
| Q |
1 |
acgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactct |
100 |
Q |
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| T |
5051990 |
acgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactct |
5052089 |
T |
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| Q |
101 |
taaagatagtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaatattcagtgaacattgaagacaatagtac |
200 |
Q |
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| T |
5052090 |
caaagacagtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaa-attcagtgaacatttaagacaatagtac |
5052188 |
T |
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| Q |
201 |
cttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcattgacttaactagtcaatgttnnnnn |
300 |
Q |
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| T |
5052189 |
cttggtttcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgctttgcattgacttaactagtcaatgttaaaaa |
5052288 |
T |
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| Q |
301 |
nnttgattataatatacaatatggatttcaaatatagtagttaatatcaaatttgcacggtgatataacagggatgcccttca |
383 |
Q |
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| T |
5052289 |
atttgattataatatacaatatggctttcaaatatagtagttaatatcaaatttgcacggtgctataacagggatgcccttca |
5052371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
197 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcatt |
276 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 5048513 - 5048570
Alignment:
| Q |
339 |
agttaatatcaaatttgcacggtgatataacagggatgcccttcacttctgtgatgtgc |
397 |
Q |
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| T |
5048513 |
agttaatatcaaatttgcacggtccta-aatagggatgcccttcacttttgtgatgtgc |
5048570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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