View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_high_6 (Length: 365)
Name: NF17804_high_6
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 26 - 342
Target Start/End: Original strand, 27858172 - 27858488
Alignment:
| Q |
26 |
atcacgatgatccgctacgattttggcaaaagctacattttagagctttatcaaaatcacgatactgtcgtggttatatcaaacccaccacttatccaaa |
125 |
Q |
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| T |
27858172 |
atcacgatgatccaccacgattttgacaaaagctacattttagagctttatcaaaatcacgatactgtcgtggttatatcaaacccaccacttatccaaa |
27858271 |
T |
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| Q |
126 |
catacacttctacctatttctcattatgtgagcatgcattaaacacatattagtagttatttcaaacttcataacattataaacataattcatgatcaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27858272 |
catacacttctacctatttctcattatgtgagcatgcattaaacacatattagtagttatttcaaacttcataacattataaacataattcaagatcaac |
27858371 |
T |
|
| Q |
226 |
ctgcacattagctccggtaactatgttcggcttatcataaggtttgccttctgcttttctcttagtctgccatttccttttaaaagctaaaccagctaac |
325 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27858372 |
ctgcacattagctccagtaactatgttaggcttatcataaggtttgccttctgcttttctcttagtctgccatttccttttaaaagctaaaccagctaac |
27858471 |
T |
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| Q |
326 |
attattgcctctgatga |
342 |
Q |
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||||||||||||||||| |
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| T |
27858472 |
attattgcctctgatga |
27858488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 9712540 - 9712502
Alignment:
| Q |
46 |
ttttggcaaaagctacattttagagctttatcaaaatca |
84 |
Q |
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| T |
9712540 |
ttttggcaaaagctacattttagagcttcaacaaaatca |
9712502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 29179423 - 29179305
Alignment:
| Q |
224 |
acctgcacattagctccggtaactatgttcggcttatcataaggtttgccttctgcttttctcttagtctgccatttccttttaaaagctaaaccagcta |
323 |
Q |
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||||| ||||| ||||| || || ||||| || || |||||||| || || ||| |||||| || ||||||| |||||||| || || || ||||||| |
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| T |
29179423 |
acctggacattggctccagtgacaatgttaggtttgtcataaggctttccctcttgttttcttttgttctgccacttccttttgaatgccaatccagcta |
29179324 |
T |
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| Q |
324 |
acattattgcctctgatga |
342 |
Q |
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||||||| ||||||||||| |
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| T |
29179323 |
acattatagcctctgatga |
29179305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 38886396 - 38886354
Alignment:
| Q |
44 |
gattttggcaaaagctacattttagagctttatcaaaatcacg |
86 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |
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| T |
38886396 |
gattttggcaaaagctacattttaatgctttaacaaaatcacg |
38886354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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