View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_high_7 (Length: 363)
Name: NF17804_high_7
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 142 - 335
Target Start/End: Complemental strand, 37704647 - 37704454
Alignment:
| Q |
142 |
attacgttcaaaaagtctggtcttcgaagatattattcagtttaatgaacgccaaacttttctatgatggttactgaattaatattgttgccaaatgtca |
241 |
Q |
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| T |
37704647 |
attacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtca |
37704548 |
T |
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| Q |
242 |
tatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
335 |
Q |
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| T |
37704547 |
tatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 142 - 334
Target Start/End: Complemental strand, 37699169 - 37698974
Alignment:
| Q |
142 |
attacgttcaaaaagtct-ggtcttcgaagatattattcagtttaatgaacgccaaacttttctatgatggttactgaattaatattgttgccaaatgtc |
240 |
Q |
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| T |
37699169 |
attacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtc |
37699070 |
T |
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| Q |
241 |
atatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
334 |
Q |
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| T |
37699069 |
atatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 142 - 335
Target Start/End: Complemental strand, 37437713 - 37437520
Alignment:
| Q |
142 |
attacgttcaaaaagtct-ggtcttcgaagatattattcagtttaatgaacgccaaacttttctatgatggttactgaattaatattgttgccaaatgtc |
240 |
Q |
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| T |
37437713 |
attacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtc |
37437614 |
T |
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| Q |
241 |
atatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
335 |
Q |
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| T |
37437613 |
atatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 37698697 - 37698636
Alignment:
| Q |
274 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
335 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 5051991 - 5052131
Alignment:
| Q |
1 |
cgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactctt |
100 |
Q |
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| T |
5051991 |
cgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactctc |
5052090 |
T |
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| Q |
101 |
aaagatagtgaggttcaaagtattgacattgccaagaaggc |
141 |
Q |
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| T |
5052091 |
aaagacagtgaggttcaatgtattgacattgccaagaaggc |
5052131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 16841043 - 16841109
Alignment:
| Q |
142 |
attacgttcaaaaagtc-tggtcttcgaagatattattcagtttaatgaacgccaaacttttctatg |
207 |
Q |
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||||||||||||||||| |||||||| ||||| ||||| |||||| | ||| |||||||||| |||| |
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| T |
16841043 |
attacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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