View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_low_1 (Length: 748)
Name: NF17804_low_1
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 4 - 399
Target Start/End: Complemental strand, 2152073 - 2151678
Alignment:
| Q |
4 |
tagtggagaagcaaaggtaatgcaaagaggttttttctttcttgagtcaaatccatctaatagtaataaagtgaagagtgaagcaattgatcctccaaga |
103 |
Q |
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| T |
2152073 |
tagtggagaaccaaaggtaatgcaaagaggttttttctttcttgagtcaaatccatctaatagtaataaagtgaagagtgaagcaattgatcctccaaga |
2151974 |
T |
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| Q |
104 |
gcaagtccagtgattatcaacttaggtgagctattaacctgcattaagatgttattatgctcgatcaaattaaggtttatacacagttaagttaagcact |
203 |
Q |
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| T |
2151973 |
gcaagtccagtgattatcaacttaggtgagctattaacctgcattaagatgttattatgcttgatcaaattaaggtttatacacagttaagttaagcact |
2151874 |
T |
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| Q |
204 |
tatcatgtctctataagctcagaaaatgtctatatattctagaagcaagagaatattttcatataaattgtaaaatgttttaataagctagtgagtggac |
303 |
Q |
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| T |
2151873 |
tatcatgtctctataagctcagaaaatgtcgatatattctacaagcaaaataatattttcatctaaattgtaaaatgtttcaataagctagtgaatggac |
2151774 |
T |
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| Q |
304 |
ttaagtggttaatgagttccacttaaggacagtttgctcgaaagacctaaaacacgaatcatgcctgaaacaatctttggtcaaactttacttacc |
399 |
Q |
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| T |
2151773 |
ttgagtggttaatgagttccagttaaggacaatttgctcggaagaccacaaactcgaatcatggctgaaacgattttttgtcagactttacttacc |
2151678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 485 - 732
Target Start/End: Complemental strand, 2151609 - 2151362
Alignment:
| Q |
485 |
aataatgaacaggaaaagatgtacctcagtcttcaattgatcaagactctcatgattttcaaagaagagtgaaactgctgcaatgttaagagaaaaaagt |
584 |
Q |
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| T |
2151609 |
aataatgacaaggaaaaattgtacctcagatttcaattgatcaagcccttgatgattttcaaagaagagtgaaactgctgcaatgttaagatgaaaaaga |
2151510 |
T |
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| Q |
585 |
ggatttgctttagtactcaaaaactgaaaatgaaggaaattcttctccttgagttcagtagatgaaaacgattcagattgaagattggcagaattcgacg |
684 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
2151509 |
ggatttgctttagtactcaaaaactgaaaatgaaggaaattcttctccttgagttcagtagatgaaaccaattcagattgaagattggcagaattcgacg |
2151410 |
T |
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| Q |
685 |
gtgcggtctcaaatgctacaattgtcacatcagtatcttgttctttat |
732 |
Q |
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| T |
2151409 |
gtgcggtctcaaatgctacaattgtcccatcagtatcttgttctttat |
2151362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 2205903 - 2205858
Alignment:
| Q |
58 |
atctaatagtaataaagtgaagagtgaagcaattgatcctccaaga |
103 |
Q |
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| T |
2205903 |
atctaatagtgatattgtgaagagtgaagctattgatcctccaaga |
2205858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 2108450 - 2108490
Alignment:
| Q |
359 |
gaatcatgcctgaaacaatctttggtcaaactttacttacc |
399 |
Q |
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| T |
2108450 |
gaatcatgactgaaacaatcattggtcaaactttacttacc |
2108490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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