View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_low_2 (Length: 412)
Name: NF17804_low_2
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 47873756 - 47874137
Alignment:
| Q |
20 |
ctgttgtgatatattcaggagctatgcaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgccaatcc |
119 |
Q |
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| T |
47873756 |
ctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgccaatcc |
47873855 |
T |
|
| Q |
120 |
gaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggtac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47873856 |
gaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggtac |
47873955 |
T |
|
| Q |
220 |
aaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgca |
319 |
Q |
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| T |
47873956 |
aaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgca |
47874055 |
T |
|
| Q |
320 |
tgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggcc |
401 |
Q |
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| T |
47874056 |
tgaactcatatataaggaggaagtcccttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggcc |
47874137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 47871786 - 47871409
Alignment:
| Q |
20 |
ctgttgtgatatattcaggagctatgcaccccatggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgccaatcc |
119 |
Q |
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| T |
47871786 |
ctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtggta-ct--ttgtgatactttctcatgatccaccaacctagccaaccc |
47871690 |
T |
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| Q |
120 |
gaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggtac |
219 |
Q |
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||||| |||||||| ||||||||| | | ||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||||||||||||| ||| |
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| T |
47871689 |
aaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatac |
47871590 |
T |
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| Q |
220 |
aaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgca |
319 |
Q |
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| T |
47871589 |
aacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgca |
47871490 |
T |
|
| Q |
320 |
tgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggc |
400 |
Q |
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| T |
47871489 |
tgaactcgtatataaggaggaagtcttttttcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggc |
47871409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 392
Target Start/End: Complemental strand, 36931446 - 36931146
Alignment:
| Q |
92 |
tctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcac |
191 |
Q |
| |
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|||||||||| |||||||| || || || ||||| |||||| |||||||||| || ||||| ||||| |||||||| | ||||| |||||||| |
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| T |
36931446 |
tctcatgatctacaagcctagctaaaccaaaatcaccaagccgagcattgaaacatgaatccaacataatgttactggatttaatgtccctgtgaagcac |
36931347 |
T |
|
| Q |
192 |
acattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtat |
291 |
Q |
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||| |||||||||||||| || ||||| | | ||||||||||||| ||| || || || ||||||||| ||||||||||| ||| ||| | |||| |
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| T |
36931346 |
acactgttcccattcttcctgtaggtaaagcaatgctgaagccaagcccaatgctatattatacctcattgtccatgtcaataagctctttttactgtat |
36931247 |
T |
|
| Q |
292 |
agatgagaatctaagctaccattttgcatgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagttgtactaaattcctatgtc |
391 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||| || || || || ||| | || |||||||||| ||||||||||||||||| |||| |
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| T |
36931246 |
agatgagaatctaagcttccatttgacatgaactcatatataagaagaaaatcattcttcctatggcaccaaccaagaagttgtactaaattcctgtgtc |
36931147 |
T |
|
| Q |
392 |
t |
392 |
Q |
| |
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| |
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| T |
36931146 |
t |
36931146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 5821067 - 5820862
Alignment:
| Q |
81 |
ttgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatcc |
180 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| |||||| ||||| ||| |||||||| | | ||| ||||| ||||| ||||||| |
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| T |
5821067 |
ttgtgatcctttctcatgatccacca-cctagccaatctgaaatcaccaagtttaacattgaaaatatagtccaacataatgttattggattt------- |
5820976 |
T |
|
| Q |
181 |
ctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgcttt |
280 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||| ||||| ||| ||||||||| | ||| |
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| T |
5820975 |
-tatg----tcacattgttcccattcttcatgaaggtacaacaatgct---gccaaatccataacaatgttgtagctcatatgcaatgtcaatatgattt |
5820884 |
T |
|
| Q |
281 |
ttccgcggtatagatgagaatc |
302 |
Q |
| |
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|||| || ||| | |||||||| |
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| T |
5820883 |
ttccacgatattggtgagaatc |
5820862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 36934598 - 36934477
Alignment:
| Q |
88 |
cctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaa |
187 |
Q |
| |
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|||||||||||||||| | ||| || | || |||||||| ||||||| |||||| | | ||| ||||| |||||||| ||||| | |||||||||| |
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| T |
36934598 |
cctttctcatgatccatcaacctagctagaccaaaatcccctagcttagtattgaagtcggagtccaacattatgttgcttgattttatgtccctatgaa |
36934499 |
T |
|
| Q |
188 |
gcacacattgttcccattcttc |
209 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
36934498 |
tcacacatttttcccattcttc |
36934477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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