View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17804_low_3 (Length: 404)
Name: NF17804_low_3
Description: NF17804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17804_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 49068375 - 49068752
Alignment:
| Q |
11 |
cacagacatccaaccaacaaacacaccaatagttggaggcaaaacctgaagaagttgcttctgtgttgactcaaaagaaggataaaaacaatgcacagtg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49068375 |
cacaaacatccaaccaacaaacacaccaatagttggaggcaaaacctgaagaagttgcttctgtgttgactcaaaagaaggataaaaacaatgcacagtg |
49068474 |
T |
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| Q |
111 |
tttgtgtcaagaagtccaagcaatgcaaaaataagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaag |
210 |
Q |
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| T |
49068475 |
tttgtatcaagaagtccaagcaatgcaaaaataagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaag |
49068574 |
T |
|
| Q |
211 |
ttgaagctggtggtgaaggccataatcccttggttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaa |
310 |
Q |
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| T |
49068575 |
ttgaagctggtggtgaaggccataatcccttggttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaa |
49068674 |
T |
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| Q |
311 |
acaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49068675 |
acaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgac |
49068752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 49075670 - 49075293
Alignment:
| Q |
11 |
cacagacatccaaccaacaaacacaccaatagttggaggcaaaacctgaagaagttgcttctgtgttgactcaaaagaaggataaaaacaatgcacagtg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075670 |
cacaaacatccaaccaacaaacacaccaatagttggaggcaaaacctgaagaagttgcttctgtgttgactcaaaagaaggataaaaacaatgcacagtg |
49075571 |
T |
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| Q |
111 |
tttgtgtcaagaagtccaagcaatgcaaaaataagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaag |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075570 |
tttgtatcaagaagtccaagcaatgcaaaaataagcaaagacaaagcagcatgcacaaagtcactacccttaagcctatactttgttaaatcaatggaag |
49075471 |
T |
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| Q |
211 |
ttgaagctggtggtgaaggccataatcccttggttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075470 |
ttgaagctggtggtgaaggccataatcccttggttgttacaattccatagtgtctctttttatcagttcctgtataactatctgtgaaggttgaaaagaa |
49075371 |
T |
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| Q |
311 |
acaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgac |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49075370 |
acaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgac |
49075293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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