View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_1 (Length: 1133)
Name: NF17805_high_1
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 235 - 516
Target Start/End: Complemental strand, 49568386 - 49568104
Alignment:
| Q |
235 |
atcacatcttcaaggaattcatgtgagcacaatcaatttgattccactcttttatgggtgttt-attttgaggactcttcttctcctttcattcattggc |
333 |
Q |
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| T |
49568386 |
atcacatcttcaaggaatgcatgtgagcacaatcaatttgattccactcttttatgggtgttttattttgaggactcttcttctcctttcattcattggc |
49568287 |
T |
|
| Q |
334 |
ttgctgatatcgtatttaatccacatgaataacaagtaaaattgtcctttgtaagaatcatataatttagtaataaacaactaaataatgaaaccttcat |
433 |
Q |
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| T |
49568286 |
ttgctgacatcgtatttaatccacatgaataacaagtaaaattgtcctttgtaggaatcatatcattcagtaacaaacaactaaataatgaaaccttcat |
49568187 |
T |
|
| Q |
434 |
aggaacatatttaatccacataacatttgatacatttgtgtcgtgaacatgttcgtcattagataacatgtgataaattccac |
516 |
Q |
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| T |
49568186 |
aggaacatatttaatccacacaacatttgatacatttgtgtcgtcaacatgctcgtcattagataacatgtgataaattccac |
49568104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 817 - 1133
Target Start/End: Complemental strand, 49563740 - 49563418
Alignment:
| Q |
817 |
tgtaacctattgttacgatacatccaggccgatcagggcgtaactctcaaacatgagtaataaggagttacgatacaccaagccattcgggggttacaaa |
916 |
Q |
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| T |
49563740 |
tgtaacctattgttacgatacatccaggccgatcagggcgtaactctcgaacatgagtaataaggagttac---acaccaagccattagggggttacaaa |
49563644 |
T |
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| Q |
917 |
tattttgagtagtagcaatgagtttgaccagaaccaaacccaatctgaccgaggaacacccttaggtcccataatatcagtagcgcctcctcagacgctg |
1016 |
Q |
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| T |
49563643 |
tattttgaggagtagcaatgagtttgaccaaaaccaaacccaatctgaccgaggaacacccttaggtcccataatatcagtagcg---cctcagacgctg |
49563547 |
T |
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| Q |
1017 |
agggaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgt------------cttcatctacatccac |
1104 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49563546 |
aggtaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgttgttgttacctccttcatctacatccac |
49563447 |
T |
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| Q |
1105 |
gccgctctctcaacaacctttgcttctcc |
1133 |
Q |
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| T |
49563446 |
gccgctctctcaacaaccttttcttctcc |
49563418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 511 - 825
Target Start/End: Complemental strand, 49568007 - 49567721
Alignment:
| Q |
511 |
ttccacccttcgtatcaacatgctagctaatagttaactattgatatcagctaccaacagtaaatggtcacgcaaaaggagcacactccaaccaaaggat |
610 |
Q |
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| T |
49568007 |
ttccacccttcatatcaacatgcta----atagttaactattcatatcagctaccaacagtaaatgatcacgcaaaaggaccacactccaaccaaaggat |
49567912 |
T |
|
| Q |
611 |
caatnnnnnnnnnngagtattaaccccattacctacaaccctactaaactatcatcaactaaaagacattcatctatagtacaacataatgaatgcctca |
710 |
Q |
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| T |
49567911 |
caataaaaaaaaa-gagtattaacctgattacctacaaccctactaaattatcatcaactaaaagacattcatctatagtacagcat-atgaatgcctca |
49567814 |
T |
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| Q |
711 |
tattgccgccgcatcttaagctctgacaagtgatgataaatcaactcgcgaccatactttattcattcattcaaagtaccaaatacatgtcatcgatgct |
810 |
Q |
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| T |
49567813 |
tattgccgc----------------acaagtggtgataaatcaactcgcgaccatactt-----attcattcaaa-taccaaatacatgtcatcgatgct |
49567736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 49568525 - 49568385
Alignment:
| Q |
27 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49568525 |
ttatcaacatcgtatgcatgcagcctcaaatgagcgagtgaccgcggccaacaagaaatcatctgcatcgctaataaaactattccaataccccatatat |
49568426 |
T |
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| Q |
127 |
tattcatcgaataacaacatcaatgttaaacttataataat |
167 |
Q |
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| T |
49568425 |
tattcatcgaacaacaacatcaatgttaaacttataataat |
49568385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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