View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_14 (Length: 345)
Name: NF17805_high_14
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 4934208 - 4934541
Alignment:
| Q |
1 |
aggagctagctagaaaacttcgggttgtacttttgtaatacctaagtgattgaggttacatgattgataaacttcatcaaataacgaattatttgaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4934208 |
aggagctagctagaaaacttcgggttgtacttttgtaatacctaagtgattgaggttacatgattgataaacttcatcaaataacaaattatttgaaaga |
4934307 |
T |
|
| Q |
101 |
atccaattttaatttcaaagtgcaacannnnnnngtcaaaatata-tttactttaaagctaaactttatattactaagatctacttccgttagaaactga |
199 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4934308 |
atccaattttaatttcaaagtgcaacaattttttgtcaaaatatattttactttaaagctaaactttatattactaagatccacttccgttagaaactga |
4934407 |
T |
|
| Q |
200 |
actg-ttaacat--nnnnnnngcttagtacttagcaataatacattatttaaatgtgtgtcttctttcttctcatcagtacgcctcgtgatgaagtatta |
296 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4934408 |
actgtttaacataaaaaaaaagcttagtacttagcaataatacattatttaaatgtgtgtcttctttcttttcatcagtacgcctcgtgatgaagtatta |
4934507 |
T |
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| Q |
297 |
aaaagaaattgtggtgagatggatggatatagtt |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4934508 |
aaaagaaattgtggtgagatggatggatatagtt |
4934541 |
T |
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