View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_19 (Length: 300)
Name: NF17805_high_19
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 14288549 - 14288819
Alignment:
| Q |
19 |
cttcgaaccatttcttcctttcttcaaaatgtttttcgccgg-tagctatctctttcttcatccattttacttgcaaatatatatattccttttttcaga |
117 |
Q |
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| T |
14288549 |
cttcgaaccatttcttcctttcttcaaaatgtttttcgccggatatatattcctttcttcatccattttacttgcaaatat--atattccttttttcaga |
14288646 |
T |
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| Q |
118 |
ttcatcgaataattcatgtatctcgtttataatatagaccggatacaccagaggatgttattactcatctctttctttttccaggttgctttggcctcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14288647 |
ttcatcgaataattcatgtatctcgtttataatatagaccggatacaccagaggatgttattgctcatctctttctttttccaggttgctttggcctcat |
14288746 |
T |
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| Q |
218 |
actcttaaagaacgccatcctaatttaccaggtattagggtggaacaattttccttttaattcaattcctttg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14288747 |
actcttaaagaacgccatcctaatttaccaggtattagcgtggaacaattttccttttaattcaattcctttg |
14288819 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 30206590 - 30206534
Alignment:
| Q |
101 |
atattccttttttcagattcatcgaataattcatgtatctcgtttataatatagacc |
157 |
Q |
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| T |
30206590 |
atattccttttttcagattcattgaataattgatgtatctggtttataatatagacc |
30206534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 40332296 - 40332345
Alignment:
| Q |
108 |
ttttttcagattcatcgaataattcatgtatctcgtttataatatagacc |
157 |
Q |
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| T |
40332296 |
ttttttcaaattcattgaataattcatgtatatgatttataatatagacc |
40332345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 19996068 - 19996117
Alignment:
| Q |
107 |
cttttttcagattcatcgaataattcatgtatctcgtttataatatagac |
156 |
Q |
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| T |
19996068 |
ctttttttagattcattgaataattgatgtatctagattataatatagac |
19996117 |
T |
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