View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_23 (Length: 275)
Name: NF17805_high_23
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_23 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 45075627 - 45075901
Alignment:
| Q |
1 |
agaaaaataaggttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattgga |
100 |
Q |
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| T |
45075627 |
agaaaaataaggttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattgga |
45075726 |
T |
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| Q |
101 |
tatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttgtcccaccaataagatccttgtcca |
200 |
Q |
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| T |
45075727 |
tatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgtcccttgtggaacttgtcccaccaataagatccttgtcca |
45075826 |
T |
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| Q |
201 |
tcaattgtcccattgttaccttatgaacaaaattcaattgatcaaattttcatatacgctcgacaaattttaata |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||| |
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| T |
45075827 |
tcaattgtcccattgttaccttatgaacaaaattcaatagatcaaattttaatataagcttgacaaattttaata |
45075901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 45083061 - 45083312
Alignment:
| Q |
5 |
aaataaggttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatt |
104 |
Q |
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|||||| ||||| |||||| || || |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
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| T |
45083061 |
aaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtacaaaccaagaaggggaattgaccaaagtgagatttgatatt |
45083160 |
T |
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| Q |
105 |
tggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttgtcccaccaataagatccttgtccatcaa |
204 |
Q |
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| T |
45083161 |
tggatttgatcagaatacataatctcaatcatatatggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatcaa |
45083260 |
T |
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| Q |
205 |
ttgtcccattgttaccttatgaacaaaattcaattgatcaaattttcatata |
256 |
Q |
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| T |
45083261 |
ttgtcccattgttaccttatgtagaaaattcaatagatcaaattttaatata |
45083312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 45068017 - 45068259
Alignment:
| Q |
8 |
taaggttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttgg |
107 |
Q |
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| T |
45068017 |
taaggttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaattaggagagttgatcaaagtgagatttgatatttgg |
45068116 |
T |
|
| Q |
108 |
atttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttgtcccaccaataagatccttgtccatcaattg |
207 |
Q |
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| T |
45068117 |
atttgatcagaatacataatctcaatcatatatggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatcaattg |
45068216 |
T |
|
| Q |
208 |
tcccattgttaccttatgaacaaaattcaattgatcaaatttt |
250 |
Q |
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| T |
45068217 |
tcccattgttaccttatgtagaaaattcaatagatcaaatttt |
45068259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 45078769 - 45078958
Alignment:
| Q |
38 |
atcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatg |
137 |
Q |
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||||||||||||||||| |||||| |||||||| | || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45078769 |
atcaaacctgctgtaaattggatgaacaaaccatgttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
45078868 |
T |
|
| Q |
138 |
tatggcctagtgattttcatttgacccttgtggaacttgtcccaccaataagatccttgtccatcaattgtcccattgttaccttatgaa |
227 |
Q |
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| T |
45078869 |
tatggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatcaattgtcccattgtcaccttttgaa |
45078958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 34505445 - 34505652
Alignment:
| Q |
17 |
aaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatca |
116 |
Q |
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|||| ||||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34505445 |
aaaaattgaaaatggtgcattatcaaacctgctgtaagttggatggacaaaccaagaaggggaattgatcaaagtgagatttgatatttggatttgatca |
34505544 |
T |
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| Q |
117 |
gaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttgtcccaccaataagatccttgtccatcaattgtcccattgt |
216 |
Q |
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| T |
34505545 |
gaatacaaaatctcaatcatgtatggcctagtgattttcaattgtttattatgaaacttgtcccaccaatatgatccttgtccatcaattgtcccgttgt |
34505644 |
T |
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| Q |
217 |
taccttat |
224 |
Q |
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|||||||| |
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| T |
34505645 |
taccttat |
34505652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 17587920 - 17588071
Alignment:
| Q |
64 |
caaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacc |
163 |
Q |
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|||||||||| || ||||| | |||||| ||||| |||||||| |||| | ||| ||||||||||||||| ||||||||| |||| ||||| || | | |
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| T |
17587920 |
caaaccaagatggagaattaaacaaagtaagatttgatatttgaattttgttagagaacataatctcaatcaagtatggcctggtgagtttcaattcatc |
17588019 |
T |
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| Q |
164 |
cttgtggaacttgtcccaccaataagatccttgtccatcaattgtcccattg |
215 |
Q |
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||||||||||||| |||||||||||| ||||| ||||||||||| |||||| |
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| T |
17588020 |
tttgtggaacttgttccaccaataagaaccttgaccatcaattgttccattg |
17588071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 41333560 - 41333454
Alignment:
| Q |
42 |
aacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatgtatg |
141 |
Q |
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| T |
41333560 |
aacctgctgtaaacaggatggacattccaggatggagaattaaccaaagtaagattggatatctgtatattatccgagtacatgatttcaatcaggtaag |
41333461 |
T |
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| Q |
142 |
gcctagt |
148 |
Q |
| |
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||||||| |
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| T |
41333460 |
gcctagt |
41333454 |
T |
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