View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_25 (Length: 237)
Name: NF17805_high_25
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45075952 - 45076174
Alignment:
| Q |
1 |
gtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45075952 |
gtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgatt |
45076051 |
T |
|
| Q |
101 |
catcctgactcatataaaagtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtccttttgtataatgattatatatacctgagat |
200 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45076052 |
catcctgaatcatataaacgtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtccttttgtataatgattatatatacctgagat |
45076151 |
T |
|
| Q |
201 |
gcaagaatgacagcatctttttg |
223 |
Q |
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||||||||||||| ||||||||| |
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| T |
45076152 |
gcaagaatgacagaatctttttg |
45076174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 45068327 - 45068495
Alignment:
| Q |
1 |
gtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgatt |
100 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||||| ||||| || | ||||||||||| ||||||| || |||| |||||||||||||| |
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| T |
45068327 |
gtgaggttagttccaaaaatgagactactaaaccttccatcaggtgcatctttttctcttccataagatggtaaaaaagataatttaggccattctgatt |
45068426 |
T |
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| Q |
101 |
catcctgactcatataaaagtccctttaattgattatagactttttaaaaattcctcaaaacaaaagtc |
169 |
Q |
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| T |
45068427 |
catcctgtatcatataaatgaccctttaattgattataaaattttaaaaaatactacaaaacaaaagtc |
45068495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45079063 - 45079168
Alignment:
| Q |
1 |
gtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgatt |
100 |
Q |
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|
||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
45079063 |
gtgaggttagttccaaaaatgagactactaaaccttccagcaggtgcatctcttccccttccataagatggtaaaacaagaagttgaggccattctgatt |
45079162 |
T |
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| Q |
101 |
catcct |
106 |
Q |
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|||||| |
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| T |
45079163 |
catcct |
45079168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 45083549 - 45083589
Alignment:
| Q |
183 |
attatatatacctgagatgcaagaatgacagcatctttttg |
223 |
Q |
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| T |
45083549 |
attatatatacctgagatgcaagaatgacagcatctttttg |
45083589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 45083383 - 45083484
Alignment:
| Q |
2 |
tgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgattc |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||| | ||||| ||||||||||| |||||| |||| | ||||||||| || ||||| |
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| T |
45083383 |
tgaggttagttccaaaaatgagactgctaaaccttccaccaggcttttctcttcctcttccataagatggtaaagcaggaagttgaggccaatcggattc |
45083482 |
T |
|
| Q |
102 |
at |
103 |
Q |
| |
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|| |
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|
| T |
45083483 |
at |
45083484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 45079261 - 45079298
Alignment:
| Q |
186 |
atatatacctgagatgcaagaatgacagcatctttttg |
223 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||| |
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| T |
45079261 |
atatatacctgagatccaagaataacagcatctttttg |
45079298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 34505759 - 34505886
Alignment:
| Q |
1 |
gtgaggttagttccaaaaacgagactgctaaaccttccatcagatgcattccttccacttccataagaaggtaaaacagggaattgaggccattctgatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||||| ||||||||| | ||| ||||| ||||| ||||||||||| |||||| ||| | |||||||||| ||||| |
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| T |
34505759 |
gtgaggtgagttccgaaaatgagactactaaaccttggaccaggtgcatctcttccccttccataagatggtaaaggaggaagctgaggccattgtgatt |
34505858 |
T |
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| Q |
101 |
catcctgactcatataaaagtcccttta |
128 |
Q |
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||||||| |||||| || | ||||||| |
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| T |
34505859 |
catcctgtatcatatcaatgacccttta |
34505886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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