View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_3 (Length: 622)
Name: NF17805_high_3
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Original strand, 5214531 - 5215042
Alignment:
| Q |
6 |
agcagcacagacgataaatatttgcttccccgacctcggtagcgtcctttgattctacatgaaagtatacctagtcaatttccatgtctgatatgaacaa |
105 |
Q |
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|||| ||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214531 |
agcatcacaggcgataattatttgcttccccgaccttggtagcgtcctttgattcaacatgaaagtatacctagtcaatttccatgtctgatatgaacaa |
5214630 |
T |
|
| Q |
106 |
tgattacattaaacatatgctattttgtacgtatttgaaatattaagtccacagaagaggaaattaaaattctcaaatttgttcaaaatcttggacgttg |
205 |
Q |
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| T |
5214631 |
tgattacattaaacatatgctattttgtacgtatttgaaatattaagtccacagaagaggaaattaaaattctcaaatttgttcaaaatcttggacgttg |
5214730 |
T |
|
| Q |
206 |
tatttccaacaacaaactaaaacaaggttacacaatcacaataacatgttcgttttcctttaactagaaagattagcatgcttttatgttacatctacgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5214731 |
tatttccaacaacaaactaaaacaaggttacacaatcacaataacatgttcgttttcctttaactagaaagattagca----gttatgttacatctacgt |
5214826 |
T |
|
| Q |
306 |
gtcgataaaaataaaatacaaataccaacatagtataacacaagtggtacatatttgagnnnnnnnaccatttggccatgaagttcaattctttgatcgg |
405 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
5214827 |
gtcgataaaaataaaatacaaatgccaacatagtataacacaagt-ttacatatttgagtttttttaccatttagccatgaagttcaattctttgatcg- |
5214924 |
T |
|
| Q |
406 |
tgcgtgcgtaaggaaaaacatatgtcagaagaagttaaccccttaaataaaccttaggcacctcaaaaaattagactctacagttgtgcacatatgatac |
505 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
5214925 |
---gtgcgtaaggtaaaacatatgtcagaagaagttaaccccttaaatagaccttaggcacctcaagaaattagactctatagttgtgaacatatgatac |
5215021 |
T |
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| Q |
506 |
cttagtttatcaaaaataaat |
526 |
Q |
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||||||||||||||||||||| |
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| T |
5215022 |
cttagtttatcaaaaataaat |
5215042 |
T |
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