View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_4 (Length: 570)
Name: NF17805_high_4
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 99 - 553
Target Start/End: Original strand, 7936793 - 7937228
Alignment:
| Q |
99 |
gaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacagcatgaagtt |
198 |
Q |
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| T |
7936793 |
gaagatctatccactagctcctgaaacacagggtgttgaacaacattggagttcacaaggtattgtcgccgcgactttccgacatagacagcatgaagct |
7936892 |
T |
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| Q |
199 |
ctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctgacttaaacat |
298 |
Q |
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| T |
7936893 |
cttgttcttgtt------gcttggaggaggaagagatagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctgacttaagctt |
7936986 |
T |
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| Q |
299 |
tgttagttttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgaatggtgatgagaaaatgggaggg |
398 |
Q |
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| T |
7936987 |
tgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaa-------------gtgaatggtgatgagaaaatgggaggg |
7937073 |
T |
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| Q |
399 |
ttaaggtttgattataaaggagtgggagtagtagtaaatgatgatgatgttgtgaagtgaagagagaaacacgtgcatggcccactgtttagtaacagt- |
497 |
Q |
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| T |
7937074 |
ttaaggtttgattataaaggagtgggagtagtagtaaatgatgatgatgttgtgaagtgaagagagaaacacgtgcatggcccactgtttagtaacggta |
7937173 |
T |
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| Q |
498 |
-acacagctaagaatgatagtatatttttggtggagaaatggaaaattagttgttat |
553 |
Q |
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| T |
7937174 |
cacacagctaagaatg--agtatatttttggtggagaaatggaaaattagttgttat |
7937228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 99 - 395
Target Start/End: Original strand, 7952727 - 7953023
Alignment:
| Q |
99 |
gaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacagcatgaagtt |
198 |
Q |
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| T |
7952727 |
gaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacagcatgaagtt |
7952826 |
T |
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| Q |
199 |
ctttttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctgacttaaacat |
298 |
Q |
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| T |
7952827 |
cttgttcatgttcatgttgcttggttgaggatgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctgacttaagctt |
7952926 |
T |
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| Q |
299 |
tgttagttttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgaatggtgatgagaaaatggga |
395 |
Q |
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| T |
7952927 |
tgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagagaaagtgaattgtgatgagaaaatggga |
7953023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 7953053 - 7953101
Alignment:
| Q |
440 |
tgatgatgttgtgaagtgaagagagaaacacgtgcatggcccactgttt |
488 |
Q |
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| T |
7953053 |
tgatgatgatgtgaagtgaagggcaaaacacgtgcatggcccactgttt |
7953101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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