View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17805_high_5 (Length: 537)

Name: NF17805_high_5
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17805_high_5
NF17805_high_5
[»] chr4 (2 HSPs)
chr4 (280-518)||(866359-866595)
chr4 (17-259)||(865175-865415)
[»] chr2 (3 HSPs)
chr2 (386-510)||(45243806-45243930)
chr2 (69-264)||(31395140-31395329)
chr2 (84-255)||(38288438-38288603)
[»] chr8 (4 HSPs)
chr8 (71-255)||(14958005-14958189)
chr8 (103-211)||(15292573-15292680)
chr8 (103-211)||(15472942-15473049)
chr8 (176-258)||(4490321-4490403)
[»] chr5 (3 HSPs)
chr5 (194-258)||(19276916-19276980)
chr5 (176-258)||(19340568-19340650)
chr5 (90-166)||(7237071-7237145)
[»] chr1 (3 HSPs)
chr1 (190-258)||(6397758-6397826)
chr1 (71-264)||(7440815-7441006)
chr1 (217-264)||(41941088-41941135)
[»] chr7 (1 HSPs)
chr7 (190-263)||(5519380-5519453)
[»] chr6 (3 HSPs)
chr6 (73-149)||(9627128-9627202)
chr6 (190-265)||(1415490-1415567)
chr6 (71-167)||(33908563-33908657)
[»] scaffold0154 (1 HSPs)
scaffold0154 (217-258)||(19342-19383)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 280 - 518
Target Start/End: Original strand, 866359 - 866595
Alignment:
Q  280 ttgcatatatgagccatacttttaacaaatactttgggtttgagaaaagaaaatgcctttcactttcaaaattttagctaaacataannnnnnnnnnctt 379  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |           ||    
T  866359 ttgcatatatgagccatacttt-aacaaatactttgggtttgaaaaaagaaaatgcctttcactttcaaaattttagctaaacattatattatttct-tt 866456  T
Q  380 tacagatgttcagatgaaaagaatccaagagtgaaaccttataaattctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaat 479  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  866457 tgcagatgttcagatgaaaagaatccaagagtgaaaccttataaattttcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaagcaat 866556  T
Q  480 gtttatatgacactgttaggagtctacaagagaaaggac 518  Q
    |||||||||||||||||||||||||||||||||||||||    
T  866557 gtttatatgacactgttaggagtctacaagagaaaggac 866595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 865175 - 865415
Alignment:
Q  17 atatcataaataatttgatggtgccttaagtgcatgtttctttatataaaatactgttagaacaacgactaggaacaaaagattaaaaataagagaatgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||| |  || ||||||| |||  ||||||||||| |     
T  865175 atatcataaataatttgatggtgccttaagtgcatgtttctttaattaaaatattgttacaacaacaatcagtaacaaaaaatt--aaataagagaacga 865272  T
Q  117 aagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcacctatttctgcaactataatgcagctatagtttcgtttctattgtta 216  Q
    |||||||||| |||||| || |||||||||||| | | |||||| ||||||    ||| ||| | ||||||  | ||||||| || |||||||||||||     
T  865273 aagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtgtttatctctacgactatagagtagctataattccgtttctattgttg 865372  T
Q  217 tgatgaattagggtttcaatgttacgagcaatatatatagtag 259  Q
    |||| |||||| |||||||| |||||| |||||||||||||||    
T  865373 tgataaattagagtttcaatattacgaacaatatatatagtag 865415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 510
Target Start/End: Original strand, 45243806 - 45243930
Alignment:
Q  386 tgttcagatgaaaagaatccaagagtgaaaccttataaattctcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaaacaatgtttat 485  Q
    ||||||||||||||||||||  ||||||||||  |||  ||||||||| |||| ||||| || |||||||||||||| ||||| ||||   |||||||||    
T  45243806 tgttcagatgaaaagaatcctcgagtgaaaccacatatcttctcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttat 45243905  T
Q  486 atgacactgttaggagtctacaaga 510  Q
    |||| || |||| ||| ||||||||    
T  45243906 atgaaaccgttaagagcctacaaga 45243930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 31395140 - 31395329
Alignment:
Q  69 actgttagaacaacgactaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgc 168  Q
    ||||||||| |||| ||||| ||||||| ||   |||||||| || | ||||||||||||||||||||  ||||||||||| || || ||| ||||| |     
T  31395140 actgttagagcaacaactagtaacaaaatat---aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaacacagctcgtccaatggt 31395236  T
Q  169 acctatttctgcaactataatgcagctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagtagtacta 264  Q
     | ||| | ||   |||||| ||||||||| || ||||| ||||  |  |||| |||||||||||| |||||| |||||||||||||||| |||||    
T  31395237 gcttatctatg--gctataaagcagctataattccgtttatattactgcgatg-attagggtttcagtgttacaagcaatatatatagtactacta 31395329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 38288438 - 38288603
Alignment:
Q  84 actaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcacctatttctgcaac 183  Q
    ||||| ||||||||||||||  ||||||| || |||  ||||||||| |||||  ||||||||||| | ||||||| ||||||| |   ||   ||| ||    
T  38288438 actagtaacaaaagattaaa--taagagattgaaagagaaagacaattaacacatgatatttgttaacgtagttcggccaattgta---at---tgcgac 38288529  T
Q  184 tataatgcagctatagtttcgtttctattgttatgat--gaattagggtttcaatgttacgagcaatatatata 255  Q
    ||||  |||  |||||||  |||||||||  ||||||  ||||||||||||||||||||  |||||||||||||    
T  38288530 tatagagcatttatagttatgtttctatttctatgatgagaattagggtttcaatgttataagcaatatatata 38288603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 255
Target Start/End: Complemental strand, 14958189 - 14958005
Alignment:
Q  71 tgttagaacaacgactaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcac 170  Q
    |||||||||||| ||||| |||||||||||||| |  |||||| | |||   |||||||||||||   ||||||||||| || |||||| |||||||  |    
T  14958189 tgttagaacaacaactagtaacaaaagattaaaca--agagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgc 14958092  T
Q  171 ctatttctgcaactataatgcagctatagtttcgtttctattgttat--gatgaattagggtttcaatgttacgagcaatatatata 255  Q
    |||  ||||| | ||||  ||||||||||||  |||||||||  | |  || |||||||||||||| |||||| |||||||||||||    
T  14958091 ctacctctgcgattatagagcagctatagttatgtttctattactgtgagaagaattagggtttcagtgttacaagcaatatatata 14958005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 15292573 - 15292680
Alignment:
Q  103 aaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcacctatttctgcaactataatgcagctatagttt 202  Q
    ||||||||||| | |||||||||  ||||||||| ||||||| |||| |  ||||||||||||||  ||||| ||| | ||||||| ||| |||||||||    
T  15292573 aaataagagaacgaaagtaaaagttaatgaacacacgatatt-gttaacgcagttcgaccaattgtgcctatctctacgactataaagcaactatagttt 15292671  T
Q  203 cgtttctat 211  Q
     ||||||||    
T  15292672 tgtttctat 15292680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 15472942 - 15473049
Alignment:
Q  103 aaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcacctatttctgcaactataatgcagctatagttt 202  Q
    ||||||||||| | |||||||||  ||||||||| ||||||| |||| |  ||||||||||||||  ||||| ||| | ||||||| ||| |||||||||    
T  15472942 aaataagagaacgaaagtaaaagttaatgaacacacgatatt-gttaacgcagttcgaccaattgtgcctatctctacgactataaagcaactatagttt 15473040  T
Q  203 cgtttctat 211  Q
     ||||||||    
T  15473041 tgtttctat 15473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 4490403 - 4490321
Alignment:
Q  176 tctgcaactataatgcagctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagta 258  Q
    ||||| ||||||  |||| |||||| | |||| |||| ||||||||||||| ||||||| |||| |  |||||||||||||||    
T  4490403 tctgcgactatagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagta 4490321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 19276980 - 19276916
Alignment:
Q  194 ctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagta 258  Q
    |||||||||||||| ||||  | |||||| |||||||||||||||||| ||||||||||||||||    
T  19276980 ctatagtttcgtttgtattactgtgatgatttagggtttcaatgttactagcaatatatatagta 19276916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 19340650 - 19340568
Alignment:
Q  176 tctgcaactataatgcagctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagta 258  Q
    ||||| ||||||  |||| ||||||||| ||| ||||| ||||||||||||| |||| | |||||| ||||||||||||||||    
T  19340650 tctgcgactatagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 7237071 - 7237145
Alignment:
Q  90 aacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaatt 166  Q
    ||||||||||||||  |||||||| | ||| |||||||||||||||| |||||||||||| |  |||||| ||||||    
T  7237071 aacaaaagattaaa--taagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaatt 7237145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 6397758 - 6397826
Alignment:
Q  190 gcagctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagta 258  Q
    ||||||||||||| |||||||||  | ||||||| || ||||||| |||||| ||||||||||||||||    
T  6397758 gcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagta 6397826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 7441006 - 7440815
Alignment:
Q  71 tgttagaacaacgactaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattgcac 170  Q
    ||||||||||||  |||| |||| |||||||||  |||||||| | |||||||| |||||  | |  |||||||||||| |  |||||| ||||||  |     
T  7441006 tgttagaacaacatctagtaacataagattaaa--taagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttcggccaattatat 7440909  T
Q  171 ctatttctgcaactataatgcagctatagtttcgtttctattgttatgatgaattagggtttcaatgttacgagcaatatatatagtagtacta 264  Q
     || |||||| ||||||  || | |||||||| |||| |||| || ||||||||||| |||||  |||||| | ||||||||||| || |||||    
T  7440908 ttacttctgcgactatagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattacta 7440815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 41941135 - 41941088
Alignment:
Q  217 tgatgaattagggtttcaatgttacgagcaatatatatagtagtacta 264  Q
    ||||||||||||||||||||||||| || |||||||||| || |||||    
T  41941135 tgatgaattagggtttcaatgttacaagtaatatatatactactacta 41941088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 5519453 - 5519380
Alignment:
Q  190 gcagctatagtttcgtttctattgttatgatgaattagggttt-caatgttacgagcaatatatatagtagtact 263  Q
    |||||||||||||||||| |||| ||||||||||||| | ||| ||||||||| | |||||||||||||| ||||    
T  5519453 gcagctatagtttcgttt-tatttttatgatgaattatgatttacaatgttacaatcaatatatatagtactact 5519380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 9627128 - 9627202
Alignment:
Q  73 ttagaacaacgactaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgtta 149  Q
    |||||||||| ||||| |||||||||||  ||||||||||||| |||  ||| |||||||||||  |||||||||||    
T  9627128 ttagaacaacaactagaaacaaaagatt--aaataagagaatgaaagagaaacacaatgaacacatgatatttgtta 9627202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 1415567 - 1415490
Alignment:
Q  190 gcagctatagtttcgtttctattgttatgat--gaattagggtttcaatgttacgagcaatatatatagtagtactat 265  Q
    ||||||||||||  ||||||||| || ||||  ||||||||||||||||||||| ||   ||||||||||| ||||||    
T  1415567 gcagctatagttctgtttctattattgtgataagaattagggtttcaatgttacaagttgtatatatagtactactat 1415490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 33908563 - 33908657
Alignment:
Q  71 tgttagaacaacgactaggaacaaaagattaaaaataagagaatggaagtaaaagacaatgaacacgcgatatttgttatcatagttcgaccaattg 167  Q
    |||| ||||| | ||||| ||||||| ||||||  |||||||| | |||  |||||||||||||||  ||||||||||| |  ||||||||||||||    
T  33908563 tgttcgaacagcaactagtaacaaaatattaaa--taagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattg 33908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 19383 - 19342
Alignment:
Q  217 tgatgaattagggtttcaatgttacgagcaatatatatagta 258  Q
    |||||||||||||||||| |||||| | ||||||||||||||    
T  19383 tgatgaattagggtttcactgttacaaacaatatatatagta 19342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University