View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_high_8 (Length: 469)
Name: NF17805_high_8
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 23230690 - 23231152
Alignment:
| Q |
1 |
caggtctttcatccatatcgattgttttgccttgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23230690 |
caggtctttcatccatatcgattgttttgcctcgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactac |
23230789 |
T |
|
| Q |
101 |
ggtgggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtaacaactcatagtgatgccctttcatatctatattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
23230790 |
ggtgggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtagcaactcatagtgatgccctttcatatctatattg |
23230889 |
T |
|
| Q |
201 |
tttccttctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23230890 |
tttccttctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaacca |
23230989 |
T |
|
| Q |
301 |
ttgatccttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23230990 |
ttgatccttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttat |
23231089 |
T |
|
| Q |
401 |
gatggcatgtatataaggaaggtttggactgtcttcttcacacactaatctttcctttgctac |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23231090 |
gatggcatgtatataaggaaggtttggactgtcttcttcacacactaatctttcctttcctac |
23231152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 23222952 - 23223401
Alignment:
| Q |
8 |
ttcatccatatcgattgttttgccttgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggtgggc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||||| || | || || ||| |
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|
| T |
23222952 |
ttcatccatatcgattgttttgccttgatctaataatttaccttcagagtcaagcatcttccactcaaagcattgtactaaagctccaatcacagtcggc |
23223051 |
T |
|
| Q |
108 |
aattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtaacaactcatagtgatgccctttcatatctatattgtttcctt |
207 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||| | | ||| |
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|
| T |
23223052 |
aattcgcgcatggccaaaggcatccccgggcaacctctccttccagaaccaaatggcaacaactcaaagtcatgccctttgatatctatctcactctctt |
23223151 |
T |
|
| Q |
208 |
ctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaaccattgatcc |
307 |
Q |
| |
|
| ||||||||||||||| ||| |||| |||| || |||| ||| ||||| ||| ||||| ||||||||||||||||||||||| ||||| || |
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|
| T |
23223152 |
ttccagattctaaaaacctttcaggcctaaactctagtgggtttttccaagtctttgagtcccttccaatagcccaaatgttcacacaaactattgagcc |
23223251 |
T |
|
| Q |
308 |
ttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttatgatggca |
407 |
Q |
| |
|
|||| | |||||| ||||| || |||||||||| |||||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||| |
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| T |
23223252 |
ttttttgatcattttcccatcgaccacacaatcttttgttcctttcctagcaatcatcggtagtggtgggtgaagcctcaatgtttcttttataatggct |
23223351 |
T |
|
| Q |
408 |
tgtatataaggaaggtttggactgtcttcttcacacactaatctttcctt |
457 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |||| ||||||||| |
|
|
| T |
23223352 |
tgtatataaggaaggtttggaatgtctgcttcacatactagtctttcctt |
23223401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 48593552 - 48593111
Alignment:
| Q |
8 |
ttcatccatatcgattgttttgccttgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggtgggc |
107 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || |||| ||| || |||||||| ||||||||||||||||| |||||||| || | ||| ||||| |
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|
| T |
48593552 |
ttcatccatatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggt |
48593453 |
T |
|
| Q |
108 |
aattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtaacaactcatagtgatgccctttcatatctatattgtttcctt |
207 |
Q |
| |
|
||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| | || ||||||||||| || |||| |
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|
| T |
48593452 |
aattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatat--------- |
48593362 |
T |
|
| Q |
208 |
ctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaaccattgatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
48593361 |
ctttgttttctaaaaacctttctggcctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcc |
48593262 |
T |
|
| Q |
308 |
ttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttatgatggca |
407 |
Q |
| |
|
||| ||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||| |
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| T |
48593261 |
tttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagca |
48593162 |
T |
|
| Q |
408 |
tgtatataaggaaggtttggactgtcttcttcacacactaatctttccttt |
458 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
48593161 |
tgtatataaggaaggtttggaccgtcttcttcacacacaagtctttccttt |
48593111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 48598163 - 48597722
Alignment:
| Q |
8 |
ttcatccatatcgattgttttgccttgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggtgggc |
107 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || |||| ||| || |||||||| ||||||||||||||||| |||||||| || | ||| ||||| |
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|
| T |
48598163 |
ttcatccatatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggt |
48598064 |
T |
|
| Q |
108 |
aattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtaacaactcatagtgatgccctttcatatctatattgtttcctt |
207 |
Q |
| |
|
||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| | || ||||||||||| || |||| |
|
|
| T |
48598063 |
aattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatat--------- |
48597973 |
T |
|
| Q |
208 |
ctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacacaaaccattgatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
48597972 |
ctttgttttctaaaaacctttctggcctaaactctaatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcc |
48597873 |
T |
|
| Q |
308 |
ttttggaaccattttaccatcaacaacacaatcttccattcctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttatgatggca |
407 |
Q |
| |
|
||| ||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||| |
|
|
| T |
48597872 |
tttcagaatcatgttaccatcaaccacacaatcttccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagca |
48597773 |
T |
|
| Q |
408 |
tgtatataaggaaggtttggactgtcttcttcacacactaatctttccttt |
458 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
48597772 |
tgtatataaggaaggtttggaccgtcttcttcacacacaagtctttccttt |
48597722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 12278732 - 12278808
Alignment:
| Q |
218 |
taaaaacctttctggcttaaaatctaatgcattttcccatatcttttggtctcttcccatagcccaaatgttcacac |
294 |
Q |
| |
|
||||||||||||||| ||||| || |||| ||| ||||| | || |||||||||| ||||||||||||||||||| |
|
|
| T |
12278732 |
taaaaacctttctggattaaactccaatggattctcccacacattagggtctcttcctatagcccaaatgttcacac |
12278808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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