View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_11 (Length: 368)
Name: NF17805_low_11
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 38644473 - 38644284
Alignment:
| Q |
18 |
aaaaaacacatggttttttcgctgccactacccaaccctttttcaactacttctccttcaattgatttcctcgtcaatatgcagtgcttcatttcttctt |
117 |
Q |
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| T |
38644473 |
aaaaaacacatggttttttcgctgccactacccaaccctttttcaactacttctccttcaattgatttcctcatcaatatgcagtgcttcatttcttctt |
38644374 |
T |
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| Q |
118 |
cattcttcacttgtttggtccctgaactagaattttccaatgtaaaacacaacaacatcatcttctgggaacaagtgtaacaaaattaacaa |
209 |
Q |
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| T |
38644373 |
catttttcacttgtttggtccctgaactagaatttt--aatgtaaaacacaataacatcatcttcagggaacaagtgtaacaaaattaacaa |
38644284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 38644205 - 38644142
Alignment:
| Q |
288 |
gtcgtttgtgtccccaacaacctccggcggtggaaaccaccgaccgtccctttccgtctaccta |
351 |
Q |
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| T |
38644205 |
gtcgtttgtgtccccaacaacctccggcggtggaaaccaccgaccgtcccttttcgtctaccta |
38644142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 39272920 - 39272986
Alignment:
| Q |
67 |
cttctccttcaattgatttcctcgtcaatatgcagtgcttcatttcttcttcattcttcacttgttt |
133 |
Q |
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| T |
39272920 |
cttctcgttcaattgttttcctcatcaatatgcaatgcataatttcttcttcatttttcacttgttt |
39272986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 38235946 - 38235888
Alignment:
| Q |
288 |
gtcgtttgtgtccccaacaacctccggcggtggaaaccaccgaccgtccctttccgtct |
346 |
Q |
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| T |
38235946 |
gtcgtttgtgtccccgaccacctccgtcggcggaaaccgccggccgtccttttccgtct |
38235888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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