View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_12 (Length: 358)
Name: NF17805_low_12
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 439323 - 439664
Alignment:
| Q |
1 |
atatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439323 |
atatgtgtcactgatcatggctgatgttaatgcaaccttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
439422 |
T |
|
| Q |
101 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439423 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
439522 |
T |
|
| Q |
201 |
ataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439523 |
ataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaa |
439622 |
T |
|
| Q |
301 |
accacttaggaatgcataatatacgactccaatagttgatat |
342 |
Q |
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||||||||||||||||||||||| || |||||||||||||| |
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| T |
439623 |
accacttaggaatgcataatatataacaccaatagttgatat |
439664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 28607580 - 28607240
Alignment:
| Q |
1 |
atatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
100 |
Q |
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|||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |||||||| |||||||| |||||||| |||| |||||||||||| |
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| T |
28607580 |
atatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctacgactggaaaacct |
28607481 |
T |
|
| Q |
101 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
200 |
Q |
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|||||||| |||||||||||||||| || | || ||||| ||||| |||||||||| | ||||||||||||||| |||||||| |||||||||||||||| |
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| T |
28607480 |
gtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaatttcgatgtagaaggt |
28607381 |
T |
|
| Q |
201 |
ataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaa |
300 |
Q |
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||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
28607380 |
ataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattcaagttcatctctaa |
28607281 |
T |
|
| Q |
301 |
accacttaggaatgcataatatacgactccaatagttgata |
341 |
Q |
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|||||||||||||||||| |||| ||| |||||| |||||| |
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| T |
28607280 |
accacttaggaatgcatagtatatgacaccaatatttgata |
28607240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 7590201 - 7590294
Alignment:
| Q |
240 |
aaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaaaccacttaggaatgcataatatacgactccaata |
334 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||| |||| ||| |||||| |
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| T |
7590201 |
aaatcgcaatggttgcagctttctttttaacatgtaaaatggtattcaagttcacctccgaa-cagtgaggaatgcatagtatatgacaccaata |
7590294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 13658955 - 13658650
Alignment:
| Q |
1 |
atatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
100 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| | | ||||||||||||| |||||||| |||||||| || ||||| |||||| || ||||| | |
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| T |
13658955 |
atatgtgtcactgatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagttttagctcagaaagtgtgtgagctacaattgaaaaactt |
13658856 |
T |
|
| Q |
101 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
200 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||| || ||||| | | |||||| |||||||||||||| || |||||||||||||||||||||| || |
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| T |
13658855 |
gtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtagaatgt |
13658756 |
T |
|
| Q |
201 |
ataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaa |
300 |
Q |
| |
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|||| | ||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| || |||||| |
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| T |
13658755 |
ataacggtggtcccatcaccattggaaagatgatcccggaaatcgcaatggttgcagctttctttttaacatgtaaaatgccattcaagtccatctccaa |
13658656 |
T |
|
| Q |
301 |
accact |
306 |
Q |
| |
|
|||||| |
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| T |
13658655 |
accact |
13658650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 13651466 - 13651133
Alignment:
| Q |
1 |
atatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||| |||||||| |||| |||||||| ||||| || || ||||| |||||| || ||||| | |
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| T |
13651466 |
atatgtgtcactgatcatagctgttgttaatgccgtctgaccaagaccggtattaagaagtttgagctcggaaagtgtgtgagctacaattgaaaaactt |
13651367 |
T |
|
| Q |
101 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
200 |
Q |
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|||| ||| ||||||||||||||| || ||||||||| |||||||||||||| || |||| ||||||||| ||||||||||| | |||||||||| || |
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| T |
13651366 |
gtcatagtgagaactaaagtccattgtacataaacattcattgtactttcttcgagtttaggtccatcaccattgccataaaagtatcgatgtagattgt |
13651267 |
T |
|
| Q |
201 |
ataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaa |
300 |
Q |
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||||| ||| ||||| ||||| ||||| || ||||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
13651266 |
ataaaattggccccattaccatcggaaagatgatcccggaaatcgcaatggttgcatctttctttttaacatgtaaaatgctattcaagtccatctccaa |
13651167 |
T |
|
| Q |
301 |
accacttaggaatgcataatatacgactccaata |
334 |
Q |
| |
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|||||| | |||||||| |||| ||| |||||| |
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| T |
13651166 |
accactgataaatgcatagtatatgacaccaata |
13651133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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