View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_13 (Length: 350)
Name: NF17805_low_13
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 64 - 350
Target Start/End: Original strand, 38710616 - 38710902
Alignment:
| Q |
64 |
caacaatgtttgtagatgcgcgaaaattaacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacct |
163 |
Q |
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| T |
38710616 |
caacaatgtttgtagatgcgcgaaaattaacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacct |
38710715 |
T |
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| Q |
164 |
cctagaacccgaatgaccaggagatggagctggagagtcattgtcaatatcacttggttttggagcatcttcgtcggttggacttggagtcggagcatgt |
263 |
Q |
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| T |
38710716 |
cctagaacccgaatgaccaggagatggagctggagagtcattgtcaatatcacttggttttggagcatcttcgtcggttggacttggagtcggagcatgt |
38710815 |
T |
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| Q |
264 |
atgttggcaggacttggtgtcggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggt |
350 |
Q |
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| T |
38710816 |
atgttggcaggacttggtgtcggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggt |
38710902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 38710896 - 38710971
Alignment:
| Q |
275 |
acttggtgtcggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggt |
350 |
Q |
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| T |
38710896 |
acttggtgtcggagcattccaacccgatgattttgttggagaatgtgcaggagcagtccaaccggtagcacttggt |
38710971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 38710965 - 38711040
Alignment:
| Q |
275 |
acttggtgtcggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggt |
350 |
Q |
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| T |
38710965 |
acttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgtcggagtagtccaaccggtagcacttggt |
38711040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 42094268 - 42094374
Alignment:
| Q |
84 |
cgaaaattaacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatgaccag |
183 |
Q |
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| T |
42094268 |
cgaaaactaacattctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaaccttgtagagcccgaatgaccag |
42094367 |
T |
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| Q |
184 |
gagatgg |
190 |
Q |
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| T |
42094368 |
gagatgg |
42094374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 52798882 - 52798796
Alignment:
| Q |
92 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatg |
178 |
Q |
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| T |
52798882 |
aacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatg |
52798796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 52760819 - 52760906
Alignment:
| Q |
92 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
179 |
Q |
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| T |
52760819 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
52760906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 52796987 - 52796908
Alignment:
| Q |
97 |
tctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaa |
176 |
Q |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaa |
52796908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 51320390 - 51320310
Alignment:
| Q |
107 |
aaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatgaccaggaga |
187 |
Q |
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| T |
51320390 |
aaagcttcctaagaccaaaaccaccataacaataacaccaacggaaccggtcaacctagtagaatccgaacgagcaggaga |
51320310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 39711781 - 39711667
Alignment:
| Q |
91 |
taacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatgaccaggagatgg |
190 |
Q |
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| T |
39711781 |
taacattctaaaaagtaaaactacccaagaccaaagccaccacaagacccccattgacataaccactcaacctcgtagaatccgactgattaggaggtgg |
39711682 |
T |
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| Q |
191 |
agctggagagtcatt |
205 |
Q |
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| T |
39711681 |
tgcaggagaatcatt |
39711667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 35819450 - 35819540
Alignment:
| Q |
89 |
attaacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
179 |
Q |
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| T |
35819450 |
attaacattctaaaaaacaaagctatctaaaattaaagccagcacaacacagaccacaaaagaaccactcaacctcgtaaaacccgaatga |
35819540 |
T |
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