View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_15 (Length: 338)
Name: NF17805_low_15
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 35393167 - 35392860
Alignment:
| Q |
20 |
ccttgcaatgaaaacaaaaaatttccaatatgaaattcctaacgttaatgcaatcaacagcatgtatgacggtttagctcactaaattgaattttaaaca |
119 |
Q |
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| T |
35393167 |
ccttgcaatgaaaacaaaaaatttccaatatgaaattcctaacgttaatgcaatcaacaacatgtatgacggtttagctcactaaattgaattttaaaca |
35393068 |
T |
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| Q |
120 |
aaatataaaaagcttgtttgaattttaagcctatactactaatatgtgaacgtagaggatcccttactgcnnnnnnntaaatatagattctctaacaatg |
219 |
Q |
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| T |
35393067 |
agatataaaaagcttgtttgaattttaagcctatactactaatatgtgaacatagaggatcccttactgcaaaaaaaaaaatatagattctctaacaatg |
35392968 |
T |
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| Q |
220 |
atatgatagcataccaataagaaaatgtacacaatagattacataaacaaaaatcggaaactacnnnnnnntaatttattttatttagaaaatgtacata |
319 |
Q |
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| T |
35392967 |
atatgatagcataccaataagaaaatgtacacaatagattagataaacaaaaatcggaaactacaaaaaaataatttattttatttaaaaaatgtacata |
35392868 |
T |
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| Q |
320 |
gatattca |
327 |
Q |
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|||||||| |
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| T |
35392867 |
gatattca |
35392860 |
T |
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