View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17805_low_16 (Length: 336)
Name: NF17805_low_16
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_16 |
 | |
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| [»] scaffold0415 (1 HSPs) |
| | |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40805345 - 40805018
Alignment:
| Q |
1 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40805345 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
40805246 |
T |
|
| Q |
101 |
caaatcattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatc------ |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
40805245 |
caaatcattgcagatgcaaagcaaaaacagtcatcgtcaggggttgttctaagtaatgatgttctaacgttggacttggccgctggaacggatcatgcat |
40805146 |
T |
|
| Q |
195 |
-atgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggccctgatttc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40805145 |
catgcccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggcccttatttc |
40805046 |
T |
|
| Q |
294 |
gaaaacttttcgcttttgtacacttttt |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40805045 |
aaaaacttttcgcttttgtacacttttt |
40805018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 40817318 - 40817004
Alignment:
| Q |
6 |
tagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaat |
105 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |
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|
| T |
40817318 |
tagcttgtcagattaaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaat |
40817219 |
T |
|
| Q |
106 |
cattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttata |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |
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|
| T |
40817218 |
cattgcagaggcaaagcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttata |
40817119 |
T |
|
| Q |
206 |
atggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggccctgatttcgaaaacttttcg |
305 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| | |||||| | |||||| ||| || |||||||||||||| |||||| |||||||||||| |
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|
| T |
40817118 |
atggctttgattacggtctacggattgatatgcggaaaaatgtagaaatttcatatgatg-tacgattcatttgaaggctctgattcagaaaacttttcg |
40817020 |
T |
|
| Q |
306 |
cttttgtacacttttt |
321 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40817019 |
cttttgtacacttttt |
40817004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40807067 - 40806746
Alignment:
| Q |
1 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
40807067 |
gaaaatagcttgccagattaaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatgga |
40806968 |
T |
|
| Q |
101 |
caaatcattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgccc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||| ||||||||| | | |
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|
| T |
40806967 |
gaaatcattgcagaggcaaagcaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctc |
40806868 |
T |
|
| Q |
201 |
ttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatac--tatgcaacaattcatttgaaggccctgatttcgaaaa |
298 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| | ||||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
40806867 |
ttataatggctttgataacggtctacggattgatatgcggtaaaatgtagttatttcatactatatgc-acaattcatttgaaggctatgattcggaaaa |
40806769 |
T |
|
| Q |
299 |
cttttcgcttttgtacacttttt |
321 |
Q |
| |
|
||||| | |||||| ||| |||| |
|
|
| T |
40806768 |
ctttttgattttgttcacatttt |
40806746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 40812164 - 40811913
Alignment:
| Q |
1 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40812164 |
gaaaatagcttgccagattaaagtggggagccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
40812065 |
T |
|
| Q |
101 |
caaatcattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgccc |
200 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || || ||||||||||| ||||| ||||||||||||||||| |||||| | || ||||||| ||| |
|
|
| T |
40812064 |
gaaatcattgctgaggcaaagcaaaaacagtcatcctcaggggttgttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattccc |
40811965 |
T |
|
| Q |
201 |
ttataatggctttgataacggtctatggatcaatatgcggcttattgtagat |
252 |
Q |
| |
|
|||| | ||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
40811964 |
ttattacggctttgataacggtatatggattgatatgcggcttgatgtagat |
40811913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 40825889 - 40825637
Alignment:
| Q |
1 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
40825889 |
gaaaatagcttgccagattaaagtgggatcccaaaatatgtgcatagaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaatgga |
40825790 |
T |
|
| Q |
101 |
caaatcattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgccc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||| ||| |
|
|
| T |
40825789 |
gaaatcattgcagaggcaaagcaaaaacagtcttcatcaggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattccc |
40825690 |
T |
|
| Q |
201 |
ttataatggctttgataacggtctatggatcaatatgcggcttattgtagata |
253 |
Q |
| |
|
||||||| ||| |||| ||||||||||| | |||||||||||| |||||||| |
|
|
| T |
40825689 |
ttataatcgctctgatcacggtctatggtttgatatgcggcttaatgtagata |
40825637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 40811878 - 40811826
Alignment:
| Q |
269 |
caattcatttgaaggccctgatttcgaaaacttttcgcttttgtacacttttt |
321 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||| |||||| |||||||||| |
|
|
| T |
40811878 |
caattcattttaaggccctgattgggcaaactttttgcttttctacacttttt |
40811826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 15046 - 15360
Alignment:
| Q |
6 |
tagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaat |
105 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
15046 |
tagcttgtcagattaaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaat |
15145 |
T |
|
| Q |
106 |
cattgcagatgcaaagcaaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgcccttata |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
15146 |
cattgcagaggcaaagcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttata |
15245 |
T |
|
| Q |
206 |
atggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatactatgcaacaattcatttgaaggccctgatttcgaaaacttttcg |
305 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| | |||||| | |||||| ||| || |||||||||||||| |||||| |||||||||||| |
|
|
| T |
15246 |
atggctttgattacggtctacggattgatatgcggaaaaatgtagaaatttcatatgatg-tacgattcatttgaaggctctgattcagaaaacttttcg |
15344 |
T |
|
| Q |
306 |
cttttgtacacttttt |
321 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15345 |
cttttgtacacttttt |
15360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 7562 - 7885
Alignment:
| Q |
1 |
gaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgc-ttttcggatagtaaacaaagatgg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
7562 |
gaaaatagcttgccagattaaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatgg |
7661 |
T |
|
| Q |
100 |
acaaatcattgcagatgcaaagc-aaaaacagtcttcatccggggttgttctaagtaatgatgttctaacgttggacttggcctctggaacggatcatgc |
198 |
Q |
| |
|
| ||||||||||||| ||||||| |||||| ||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||| ||||||||| | |
|
|
| T |
7662 |
agaaatcattgcagaggcaaagcaaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattc |
7761 |
T |
|
| Q |
199 |
ccttataatggctttgataacggtctatggatcaatatgcggcttattgtagatacttcatac--tatgcaacaattcatttgaaggccctgatttcgaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| | ||||| || ||||||| ||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
7762 |
tcttataatggctttgataacggtctacggattgatatgcggtaaaatgtagttatttcatactatatgc-acaattcatttgaaggctatgattcggaa |
7860 |
T |
|
| Q |
297 |
aacttttcgcttttgtacacttttt |
321 |
Q |
| |
|
||||||| | |||||| ||| |||| |
|
|
| T |
7861 |
aactttttgattttgttcacatttt |
7885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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