View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_17 (Length: 323)
Name: NF17805_low_17
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 44298114 - 44298000
Alignment:
| Q |
130 |
ttaaatacaaaacattaccaaaatcgacatggccagatatgacattcatgaaaaaagtgacgctatatacttcgggaatgagttagaaggaagaccaaga |
229 |
Q |
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| T |
44298114 |
ttaaatacaaaacattaccaaaatcgacatggccagatatgacattcatgaaaaaagtgacgctatatacttcgggaatgagttagaaggaagaccaaga |
44298015 |
T |
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| Q |
230 |
aaagccacaacctct |
244 |
Q |
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| T |
44298014 |
aaagccacaacctct |
44298000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 44298150 - 44298115
Alignment:
| Q |
18 |
cattcattgtttttcttgcttaactcattagtttac |
53 |
Q |
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| T |
44298150 |
cattcattgtttttcttgcttaactcattagtttac |
44298115 |
T |
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