View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_18 (Length: 305)
Name: NF17805_low_18
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 48716044 - 48715758
Alignment:
| Q |
1 |
taacggtatggactatattagtattcacattggaataagtacgatctaaatactcgaaattttgtgcataaggaaaacatatctaaggaacatacagaaa |
100 |
Q |
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| T |
48716044 |
taacggtatggactatattagtgttcacattggaataagtacgatctaaatactcgaaattttttgcataaggaaaacatatctaaggaacatacagaaa |
48715945 |
T |
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| Q |
101 |
tgtatatatgtatatgtaattttaaataaccgcaaaagaatggaagattcactgacttcaaagttagcagccaagacttgttcaaattgttttatgatat |
200 |
Q |
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| T |
48715944 |
tgtatagatgtatatgtaatggtaaataaccacaaaagaatggaagattcactgacttcagagttagcagccaagacttgttcaaattgttttatgacct |
48715845 |
T |
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| Q |
201 |
ctggaggagtaacttggtcgttctcagctccaagtatagcaattggaatattaacacctgaaagaaagactaataattaattgctac |
287 |
Q |
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| T |
48715844 |
ctggaggagtaacttggtcattctcagctccaagtatagcaattggaatattaacacctgaaagaaagactaataattaattgctac |
48715758 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 286
Target Start/End: Complemental strand, 48703554 - 48703363
Alignment:
| Q |
96 |
agaaatgtatatatgtatatgtaattttaaataaccgcaaaa-gaatggaagattcactgacttcaaagttagcagccaagacttgttcaaattgtttta |
194 |
Q |
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| T |
48703554 |
agaaaagtatatatgtatgtataatgatatataaccacaaaaagaatagaggattcactgacttcaggtttagcagccaagacttgttcaaattgtttta |
48703455 |
T |
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| Q |
195 |
tgatatctggaggagtaacttggtcgttctcagctccaagtatagcaattggaatattaacacctgaaagaaagactaataattaattgcta |
286 |
Q |
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| T |
48703454 |
tgacctctggaggagtaattgggtcaagctcagctccaagtatagcaattggaatattgacacctgaaaggaagactgataattaattgcta |
48703363 |
T |
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