View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_2 (Length: 696)
Name: NF17805_low_2
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 15504186 - 15504542
Alignment:
| Q |
1 |
attgcatattgtttatccacgccaacaaaatacatagaaggcaagataaaatttgataaagatgttggaactaaggtgcaatcaagaaccaattcaaaat |
100 |
Q |
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| T |
15504186 |
attgcatattgtttatccacggcaacaaaatacttagaatgcaagataaaatttgataaagatgttggaactaaggtgcaatcaagaaccaattcaaaat |
15504285 |
T |
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| Q |
101 |
taattttggattataagttgatttagaaggagaatagactttaaatcccattattttccctcttatacaacggaattacttaaaatagcaatcaacaaat |
200 |
Q |
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| T |
15504286 |
taattttggactataagttgatttagaaggagaatagacttcaaatcccattattttccctcttatacaacggaattacttaaaatagcaatcaacaaat |
15504385 |
T |
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| Q |
201 |
aagatcagtttcttgagtactcaatgcacctttaacctaaattaaaaatcttcaattccttag----ttcattgttgatttatattaagcattgaaaata |
296 |
Q |
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| T |
15504386 |
aagatcagtttcttgagtactcaatgcacctttaacctaaattaaaaattttcaattccttagttcattcattgttgatttatattaagcattgaaaata |
15504485 |
T |
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| Q |
297 |
atagtagtcaaatacatgaaagtaacttgtaaggaacgggtaaaacaaattgcacaa |
353 |
Q |
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| T |
15504486 |
atagtactcaaatacatgaaagtaacttgtaaggaacgggtaaaacaaattgcacaa |
15504542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 376 - 627
Target Start/End: Original strand, 15504985 - 15505244
Alignment:
| Q |
376 |
tagctcacattacccttttgaaggtatctatagattttgtagaaatggccactcaatgaaaccaataatattagtttgagtgtcactacaaatattcacc |
475 |
Q |
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| T |
15504985 |
tagctcacattacccttttgaaggtatctatagattttgtagaaatggccactcaatgaaatcaataatattagtttgagtgtcactacaaatattcacc |
15505084 |
T |
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| Q |
476 |
aatgaggtaatgaaagag-------gtaataacccnnnnnnntatcttggaggggtaagtttgaggtaagtactgttgatttaattatttctatccaaat |
568 |
Q |
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| T |
15505085 |
aatgagctaatgaaagaggtaataagtaataacccaaaaaaatatcttggaggggtaagtttgaggtaagtactgttgatttaattatttctatccagat |
15505184 |
T |
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| Q |
569 |
ttgatgccttgaaatgacattaatacgtttgttgatattaa-cgttcttgtgagatttgt |
627 |
Q |
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| T |
15505185 |
ttgatgccttgaaatgacattaatacgtttgttgatattaaccgttcttgtgagatttgt |
15505244 |
T |
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