View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17805_low_6 (Length: 507)
Name: NF17805_low_6
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 4933837 - 4933362
Alignment:
| Q |
19 |
gcaatgtgatttaaattgtgtatattttcaaaatatccgcaagttgtataagatatataaaaattagagagatcaagaaaaacagttgtccatactatgt |
118 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933837 |
gcaatgtcatttaaattgtgcatattttcaaaatatctgcaagttgtaaaagataaataaaaattagagagatcaagaaaaacagttgtccatactatgt |
4933738 |
T |
|
| Q |
119 |
atcaattgtcataattgttaaaaa-tgacacttattttaaaacagaaaatatcatacctcagctatgatggttatgtcaagttttgtggttccaaatagc |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933737 |
atcaattgtcataattgttaaaaaatgacacttattttaaaacagaaaatatcatacctcagctatgatggttatgtcaagttttgtggttccaaatagc |
4933638 |
T |
|
| Q |
218 |
aatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacccttatgtttctcacaatggacacgaatcagca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933637 |
aatgcactactactagtgactgatagatgaagattctctatctcttggattatgttcatcaatgcacccttatgtttctcacaatggacacgaatcagca |
4933538 |
T |
|
| Q |
318 |
cgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtttgagtgtgacaacaattaccatagccagaatttgatgaggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933537 |
cgtttttctctgacactcttgcctcaacttcaggcagtgacctacttggttttgaggtgtgagtgtgacaacaattaccatagccagaatttgatgaggt |
4933438 |
T |
|
| Q |
418 |
gtctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattctacgttattc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933437 |
ttctgaaacatcttcatctgaagaatatgactttgtcttctcaacatataccatagacacagattctacgttattc |
4933362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University